• using R Under development (unstable) (2012-02-06 r58287)
  • using platform: i686-pc-linux-gnu (32-bit)
  • using session charset: UTF-8
  • checking for file ‘robustbase/DESCRIPTION’ ... OK
  • this is package ‘robustbase’ version ‘0.8-0’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package ‘robustbase’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    .vcov.w: no visible binding for global variable ‘r’
    covMcd: warning in determinant(mcd, log = TRUE): partial argument match
    of 'log' to 'logarithm'
    covMcd: warning in determinant(ans$cov, log = TRUE): partial argument
    match of 'log' to 'logarithm'
    glmrob: no visible global function definition for ‘glmrobCubif’
    glmrobMqle: no visible binding for global variable ‘residP’
    glmrobMqle: no visible binding for global variable ‘residPS’
    glmrobMqle: no visible binding for global variable ‘sV’
    glmrobMqle: no visible binding for global variable ‘dmu.deta’
    lmrob.ggw.ac: no visible binding for global variable ‘r’
    lmrob.ggw.bp: no visible binding for global variable ‘r’
    lmrob.kappa : fun.min: no visible global function definition for ‘psi’
    lmrob.kappa : fun.min: no visible binding for global variable ‘r’
    lmrob.kappa : fun.min: no visible global function definition for ‘wgt’
    lmrob.tau.fast.coefs: no visible binding for global variable ‘r’
    ltsReg.default: warning in determinant(mcd$cov, log = TRUE): partial
    argument match of 'log' to 'logarithm'
    print.summary.glmrob: warning in symnum(correl, abbr.col = NULL):
    partial argument match of 'abbr.col' to 'abbr.colnames'
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable compilation flags in Makevars ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... NOTE
    The following files look like leftovers/mistakes:
    ‘lmrob_simulation.toc’
    Please remove them from your package.
    The following files should probably not be installed:
    ‘Makefile’

    Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
    or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
  • checking examples ... [8s/8s] OK
  • checking for unstated dependencies in tests ... WARNING
    ‘data(package=)’ call not declared from: ‘cluster’
  • checking tests ... ERROR
    Running the tests in ‘tests/OGK-ex.R’ failed.
    Last 13 lines of output:

    Type 'demo()' for some demos, 'help()' for on-line help, or
    'help.start()' for an HTML browser interface to help.
    Type 'q()' to quit R.

    > library(robustbase)
    >
    > ## minimal testing only
    > data(ruspini, package = "cluster")
    Error in find.package(package, lib.loc, verbose = verbose) :
    there is no package called 'cluster'
    Calls: data -> find.package
    Execution halted