• using R Under development (unstable) (2012-02-06 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘robCompositions/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘robCompositions’ version ‘1.5.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘robCompositions’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘robCompositions/R/zzz.R’:
  .onLoad calls:
  cat("\n--------\n\n")
  cat("for references have a look at\n")
  cat("citation('robCompositions') \n")
  cat("--------\n\n")
  
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  robGUI : boxObject: no visible global function definition for
  ‘gtkHBoxNew’
  robGUI : boxObject: no visible global function definition for
  ‘gtkVBoxNew’
  robGUI : align: no visible global function definition for
  ‘gtkAlignmentNew’
  robGUI : padding: no visible global function definition for
  ‘gtkAlignmentNew’
  robGUI: no visible global function definition for ‘gtkWindowNew’
  robGUI: no visible global function definition for ‘gtkFrameNew’
  robGUI: no visible global function definition for ‘gtkComboBoxNewText’
  robGUI: no visible global function definition for ‘gtkLabelNew’
  robGUI: no visible global function definition for ‘gtkEntryNew’
  robGUI: no visible global function definition for
  ‘gtkRadioButtonNewWithLabel’
  robGUI: no visible global function definition for
  ‘gtkButtonNewWithLabel’
  robGUI: no visible global function definition for
  ‘gtkComboBoxEntryNewText’
  robGUI: no visible global function definition for ‘gSignalConnect’
  robGUI : browseInputSignal: no visible global function definition for
  ‘gtkFileChooserDialogNew’
  robGUI : browseInputSignal: no visible binding for global variable
  ‘GtkResponseType’
  robGUI : browseInput2Signal: no visible global function definition for
  ‘gtkFileChooserDialogNew’
  robGUI : browseInput2Signal: no visible binding for global variable
  ‘GtkResponseType’
  robGUI : browseOutputSignal: no visible global function definition for
  ‘gtkFileChooserDialogNew’
  robGUI : browseOutputSignal: no visible binding for global variable
  ‘GtkResponseType’
  robGUI : error: no visible global function definition for
  ‘gtkMessageDialog’
  robGUI: no visible global function definition for ‘gtkMenuBarNew’
  robGUI: no visible global function definition for
  ‘gtkMenuItemNewWithLabel’
  robGUI: no visible global function definition for ‘gtkMenuNew’
  robGUI : saveClicked: no visible global function definition for
  ‘gtkFileChooserDialogNew’
  robGUI : saveClicked: no visible binding for global variable
  ‘GtkResponseType’
  robGUI : loadClicked: no visible global function definition for
  ‘gtkFileChooserDialogNew’
  robGUI : loadClicked: no visible binding for global variable
  ‘GtkResponseType’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files should probably not be installed:
  ‘CoDaWork.sty’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... [8s/8s] WARNING
  Found the following significant warnings:
  
  Warning: mean(<data.frame>) is deprecated.
  Warning: mean(<data.frame>) is deprecated.
  Warning: mean(<data.frame>) is deprecated.
  Warning: mean(<data.frame>) is deprecated.
  Warning: mean(<data.frame>) is deprecated.
  Warning: mean(<data.frame>) is deprecated.
  Deprecated functions may be defunct as soon as of the next release of
  R.
  See ?Deprecated.
• checking for unstated dependencies in tests ... OK
• checking tests ... [1s/1s] OK
  Running ‘rz.R’ [1s/1s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [2s/2s] OK
• checking re-building of vignette PDFs ... [4s/5s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There were 2 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/robCompositions.Rcheck/00check.log’
  for details.