• using R Under development (unstable) (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘rms/DESCRIPTION’ ... OK
• this is package ‘rms’ version ‘3.4-0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘rms’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Mean.cph: multiple local function definitions for ‘f’ with different
  formal arguments
  Predict: warning in match.call(expand = FALSE): partial argument match
  of 'expand' to 'expand.dots'
  Rq: warning in summary.rq(fit, cov = TRUE, se = se, hs = hs): partial
  argument match of 'cov' to 'covariance'
  bj: warning in match.call(expand = FALSE): partial argument match of
  'expand' to 'expand.dots'
  calibrate.cph: no visible binding for global variable ‘pred.obs’
  calibrate.default: no visible binding for global variable ‘.orig.cal’
  calibrate.psm: no visible binding for global variable ‘fixed’
  calibrate.psm: no visible binding for global variable ‘pred.obs’
  cph: warning in match.call(expand = FALSE): partial argument match of
  'expand' to 'expand.dots'
  lrm: warning in match.call(expand = FALSE): partial argument match of
  'expand' to 'expand.dots'
  ols: warning in match.call(expand = FALSE): partial argument match of
  'expand' to 'expand.dots'
  pantext: multiple local function definitions for ‘z’ with different
  formal arguments
  plot.Predict: multiple local function definitions for ‘pan’ with
  different formal arguments
  plot.nomogram: warning in axis(sides[jj], at = scaled[jj], label =
  fat[jj], pos = y, cex.axis = cex.axis, tck = tck, tcl = tcl, mgp = if
  (sides[jj] == 1) c(0, lmgp - 0.6, 0) else c(0, lmgp, 0), padj = if
  (sides[jj] == 1) 1 else 0): partial argument match of 'label' to
  'labels'
  plot.summary.rms: warning in axis(3, logb(pxlim), lab = format(pxlim)):
  partial argument match of 'lab' to 'labels'
  plot.xmean.ordinaly: warning in match.call(expand = FALSE): partial
  argument match of 'expand' to 'expand.dots'
  psm: warning in match.call(expand = FALSE): partial argument match of
  'expand' to 'expand.dots'
  survplot.rms: warning in symbols(rep(tt, length(yp)), yp, circle =
  rep(dotsize, length(yp)), inches = dotsize, add = TRUE): partial
  argument match of 'circle' to 'circles'
  survplot.rms: warning in labcurve(curves, curve.labels, type = ltype,
  lty = lty, col = col, lwd = lwd, opts = label.curves): partial
  argument match of 'col' to 'col.'
  survplot.survfit: warning in symbols(rep(tt, length(yp)), yp, circle =
  rep(dotsize, length(yp)), inches = dotsize, add = TRUE): partial
  argument match of 'circle' to 'circles'
  survplot.survfit: warning in labcurve(curves, sleva, type = "s", lty =
  lty, lwd = lwd, opts = label.curves, col = col): partial argument
  match of 'col' to 'col.'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... WARNING
  ‘library’ or ‘require’ call not declared from: ‘boot’
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... [46s/46s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/rms.Rcheck/00check.log’
  for details.