• using R Under development (unstable) (2012-02-06 r58287)
  • using platform: i686-pc-linux-gnu (32-bit)
  • using session charset: UTF-8
  • checking for file ‘relsurv/DESCRIPTION’ ... OK
  • this is package ‘relsurv’ version ‘1.6.4’
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... NOTE
    As from R 2.14.0 all packages need a namespace.
    One will be generated on installation, but it is better to handcraft a
    NAMESPACE file: R CMD build will produce a suitable starting point.
  • checking for executable files ... OK
  • checking whether package ‘relsurv’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    glmxp: warning in assign(".ps", grm1$ps, env = .GlobalEnv): partial
    argument match of 'env' to 'envir'
    glmxp: warning in assign(".dstar", grm1$dstar, env = .GlobalEnv):
    partial argument match of 'env' to 'envir'
    glmxp: no visible binding for global variable ‘lny’
    print.summary.rsadd: warning in symnum(correl, abbr.col = NULL):
    partial argument match of 'abbr.col' to 'abbr.colnames'
    rformulate: warning in match.call(expand = FALSE): partial argument
    match of 'expand' to 'expand.dots'
    rs.survo: warning in match.call(expand = FALSE): partial argument match
    of 'expand' to 'expand.dots'
    rs.zph: no visible global function definition for ‘survfit.km’
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking examples ... ERROR
    Running examples in ‘relsurv-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: epa
    > ### Title: Excess hazard function smoothing
    > ### Aliases: epa kern Kern
    > ### Keywords: survival
    >
    > ### ** Examples
    >
    > data(slopop)
    > data(rdata)
    > #fit an additive model with the EM method
    > fit <- rsadd(Surv(time,cens)~sex+age+ratetable(age=age*365,
    + sex=sex,year=year), ratetable=slopop,data=rdata,int=5,method="EM")
    Error in .C("pyears3", as.integer(death), as.integer(nrow(x)), as.integer(length(atts$dim)), :
    C symbol name "pyears3" not in DLL for package "survival"
    Calls: rsadd -> em -> srvxp.fit -> .C
    Execution halted