• using R Under development (unstable) (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘press/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘press’ version ‘2.0’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
• checking for executable files ... OK
• checking whether package ‘press’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  callAngle: warning in ggroup(horizontal = FALSE, cont = window):
  partial argument match of 'cont' to 'container'
  callAngle: warning in ggroup(cont = window): partial argument match of
  'cont' to 'container'
  callBond: warning in ggroup(horizontal = FALSE, cont = window): partial
  argument match of 'cont' to 'container'
  callBond: warning in ggroup(cont = window): partial argument match of
  'cont' to 'container'
  callEval: warning in ggroup(horizonta = FALSE, cont = window): partial
  argument match of 'horizonta' to 'horizontal'
  callEval: warning in ggroup(horizonta = FALSE, cont = window): partial
  argument match of 'cont' to 'container'
  callEval: warning in gframe("Name", cont = vertgroup): partial argument
  match of 'cont' to 'container'
  callEval: warning in gframe("File Path", cont = vertgroup): partial
  argument match of 'cont' to 'container'
  callEval: warning in gbutton(text = "Browse", handler = function(h,
  ...) editfile(), cont = vertgroup): partial argument match of 'cont'
  to 'container'
  callEval: warning in gbutton(text = "Evaluate Bonds Potentials",
  handler = function(h, ...) bond.eval(), cont = vertgroup): partial
  argument match of 'cont' to 'container'
  callEval: warning in gbutton(text = "Evaluate Angles Potentials",
  handler = function(h, ...) angle.eval(), cont = vertgroup): partial
  argument match of 'cont' to 'container'
  callEval: warning in gbutton(text = "Residue Level Ramachandran Plots
  a-t", handler = function(h, ...) cont1.eval(), cont = vertgroup):
  partial argument match of 'cont' to 'container'
  callEval: warning in gbutton(text = "Residue Level Ramachandran Plots
  b-t", handler = function(h, ...) cont2.eval(), cont = vertgroup):
  partial argument match of 'cont' to 'container'
  callTAT: warning in ggroup(horizontal = FALSE, cont = window): partial
  argument match of 'cont' to 'container'
  callTAT: warning in ggroup(cont = window): partial argument match of
  'cont' to 'container'
  callTorsion: warning in ggroup(horizontal = FALSE, cont = window):
  partial argument match of 'cont' to 'container'
  callTorsion: warning in ggroup(cont = window): partial argument match
  of 'cont' to 'container'
  press: warning in gmenu(menubarlist, cont = window): partial argument
  match of 'cont' to 'container'
  press: warning in ggroup(horizontal = FALSE, cont = window): partial
  argument match of 'cont' to 'container'
  press: warning in ggroup(cont = BigGroup, expand = TRUE): partial
  argument match of 'cont' to 'container'
  press: warning in gbutton("Bond Distance - Two Residues", cont =
  topgroup, handler = function(h, ...) callBond()): partial argument
  match of 'cont' to 'container'
  press: warning in gbutton("Bond Angle - Three Residues", cont =
  topgroup, handler = function(h, ...) callAngle()): partial argument
  match of 'cont' to 'container'
  press: warning in gbutton("Torsion, ATA - Four Residues ", cont =
  topgroup, handler = function(h, ...) callTorsion()): partial argument
  match of 'cont' to 'container'
  press: warning in glabel(text = " P.R.E.S.S.", cont = middlegroup):
  partial argument match of 'cont' to 'container'
  press: warning in gbutton(" TAT - Five Residues ", cont = bottomgroup,
  handler = function(h, ...) callTAT()): partial argument match of
  'cont' to 'container'
  press: warning in gbutton(" Structural Analysis ", cont = bottomgroup,
  handler = function(h, ...) callEval()): partial argument match of
  'cont' to 'container'
  press: warning in gbutton(" Info ", cont = bottomgroup, handler =
  function(h, ...) gmessage("P.R.E.S.S. Version 1.0 \nCopywrite 2010
  Yuanyuan Huang, Stephen Bonett, Zhijun Wu", title = "P.R.E.S.S.
  Info")): partial argument match of 'cont' to 'container'
  Found .Internal calls in the following functions:
  ‘decoy.ramachandran.plot1’ ‘decoy.ramachandran.plot2’
  with calls to .Internal functions
  ‘filledcontour’
  
  Packages should not call .Internal(): it is not part of the API, for
  use only by R itself and subject to change without notice.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [6s/17s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/press.Rcheck/00check.log’
  for details.