• using R Under development (unstable) (2012-02-04 r58267)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘prabclus/DESCRIPTION’ ... OK
• this is package ‘prabclus’ version ‘2.2-2’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
• checking for executable files ... OK
• checking whether package ‘prabclus’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [13s/13s] OK
• checking differences from ‘prabclus-Ex.Rout’ to ‘prabclus-Ex.Rout.save’ ...
  2,6d1
  < by using mclust, invoked on its own or through another package,
  < you accept the license agreement in the mclust LICENSE file
  < and at http://www.stat.washington.edu/mclust/license.txt
  <
  <
  22a18,22
  >
  > by using mclust, invoked on its own or through another package,
  > you accept the license agreement in the mclust LICENSE file
  > and at http://www.stat.washington.edu/mclust/license.txt
  >
  29a30,32
  >
  > detaching 'package:mclust'
  >
  279d281
  < > # This uses example data file Heterotrigona_indoFO.dat
  5170a5173,5177
  >
  > by using mclust, invoked on its own or through another package,
  > you accept the license agreement in the mclust LICENSE file
  > and at http://www.stat.washington.edu/mclust/license.txt
  >
  5198a5206,5208
  >
  > detaching 'package:mclust'
  >
  5498c5508
  < Simulation run 3 statistics value= 0.332721
  ---
  > Simulation run 3 statistics value= 0.3327210
  5687a5698,5702
  >
  > by using mclust, invoked on its own or through another package,
  > you accept the license agreement in the mclust LICENSE file
  > and at http://www.stat.washington.edu/mclust/license.txt
  >
  5764a5780,5782
  >
  > detaching 'package:mclust'
  >
  6911,6916c6929,6934
  < [1,] 0.000000 0.00000 0.00000 16.11435 1.067697 0.0000000 2.4621550
  < [2,] 0.000000 0.00000 76.90005 3.66948 10.747353 0.0000000 1.2479732
  < [3,] 5.008095 0.00000 210.25975 11.51045 10.088479 0.8249231 0.0000000
  < [4,] 4.127893 11.49375 0.00000 0.00000 0.000000 1.0273839 0.7723558
  < [5,] 0.000000 132.25835 0.00000 0.00000 0.000000 0.7983795 0.0000000
  < [6,] 0.000000 0.00000 0.00000 0.00000 0.000000 0.0000000 0.0000000
  ---
  > [1,] 0.000000 0.00000 0.00000 16.114352 1.067697 0.0000000 2.4621550
  > [2,] 0.000000 0.00000 76.90005 3.669480 10.747353 0.0000000 1.2479732
  > [3,] 5.008095 0.00000 210.25975 11.510450 10.088479 0.8249231 0.0000000
  > [4,] 4.127893 11.49375 0.00000 0.000000 0.000000 1.0273839 0.7723558
  > [5,] 0.000000 132.25835 0.00000 0.000000 0.000000 0.7983795 0.0000000
  > [6,] 0.000000 0.00000 0.00000 0.000000 0.000000 0.0000000 0.0000000
  6953,6958c6971,6976
  < [1,] 0.000000 0.09669243 8.171236 37.41091 0.000000 0.7199853 0.0000000
  < [2,] 5.443011 1.18816242 79.494097 23.09044 0.000000 0.0000000 0.0000000
  < [3,] 84.260235 26.49854856 68.599066 38.35432 0.000000 0.0000000 0.7297678
  < [4,] 72.365691 14.82499277 114.493929 20.40709 0.000000 0.0000000 0.0000000
  < [5,] 24.676810 21.91348340 69.902641 96.19975 3.581301 0.0000000 0.0000000
  < [6,] 100.327519 19.85900594 93.736155 44.97300 0.000000 0.0000000 0.0000000
  ---
  > [1,] 0.00000 0.09669243 8.171236 37.41091 0.000000 0.7199853 0.0000000
  > [2,] 5.44301 1.18816242 79.494097 23.09044 0.000000 0.0000000 0.0000000
  > [3,] 84.26024 26.49854856 68.599066 38.35432 0.000000 0.0000000 0.7297678
  > [4,] 72.36569 14.82499277 114.493929 20.40709 0.000000 0.0000000 0.0000000
  > [5,] 24.67681 21.91348340 69.902641 96.19975 3.581301 0.0000000 0.0000000
  > [6,] 100.32752 19.85900594 93.736155 44.97300 0.000000 0.0000000 0.0000000
  6980,7042c6998,7067
  < [,78] [,79] [,80] [,81] [,82] [,83] [,84] [,85]
  < [1,] 0.00000 0.000000 0.000000 0.0000000 0.0000000 0.000000 0.000000 0.0000000
  < [2,] 0.00000 0.000000 0.000000 0.0000000 0.1548590 0.000000 0.000000 0.0000000
  < [3,] 0.00000 2.206035 0.000000 1.7816330 0.7675381 0.994798 0.000000 0.0000000
  < [4,] 0.00000 0.958365 0.000000 0.5883424 0.0000000 64.694774 0.000000 0.7237579
  < [5,] 0.00000 0.000000 4.073145 0.0000000 0.0000000 0.000000 5.592687 0.2872582
  < [6,] 1.38864 0.000000 2.232838 0.0000000 0.0000000 0.000000 5.749486 0.0000000
  < [,86] [,87] [,88] [,89] [,90] [,91] [,92]
  < [1,] 4.114957 0.000000 0.00000 5.709805 42.39022 0.0000000 0.000000
  < [2,] 119.898059 0.000000 12.88441 8.800875 31.64993 0.9771071 0.000000
  < [3,] 62.177392 144.153967 764.64149 16.274348 0.00000 1.0832240 1.128364
  < [4,] 0.000000 39.056608 22.09675 0.000000 47.00413 3.4273383 2.121247
  < [5,] 0.000000 4.721707 19.18309 1.444741 0.00000 0.0000000 20.916254
  < [6,] 0.000000 0.000000 0.00000 0.000000 0.00000 6.3784003 6.226726
  < [,93] [,94] [,95] [,96] [,97] [,98] [,99]
  < [1,] 0.0000000 2.13847796 0.00000 0.0000000 0.000000 0.00000 0.000000
  < [2,] 0.0000000 0.56435938 19.81987 0.0000000 0.000000 0.00000 0.000000
  < [3,] 2.1739064 0.96561250 0.00000 0.9186969 1.009141 0.00000 2.634697
  < [4,] 12.0661980 0.00000000 0.00000 0.0000000 0.000000 0.00000 0.000000
  < [5,] 0.4321756 0.00000000 0.00000 0.0000000 0.000000 10.57284 0.000000
  < [6,] 4.5634477 0.07314588 0.00000 0.0000000 0.000000 0.00000 0.000000
  < [,100] [,101] [,102] [,103] [,104] [,105] [,106]
  < [1,] 0.000000 0.000000 0.00000 0.00000 20.839191 95.213457 0.0000000
  < [2,] 0.000000 0.000000 0.00000 0.00000 1.886432 16.094048 2.3226696
  < [3,] 1.225024 2.627345 0.00000 0.00000 4.057996 8.075579 0.3911095
  < [4,] 1.247676 15.378599 57.85269 19.39789 0.000000 0.000000 1.9842398
  < [5,] 0.000000 0.000000 19.39938 28.51305 0.000000 0.000000 0.0000000
  < [6,] 0.000000 0.000000 0.00000 0.00000 0.000000 0.000000 0.0000000
  < [,107] [,108] [,109] [,110] [,111] [,112] [,113] [,114]
  < [1,] 0.000000 0.0000 0.00000 2.477603 0.0000 1.426660 0.00000 0.000000
  < [2,] 0.000000 0.0000 0.00000 4.015401 134.4282 2.171732 0.00000 1.360849
  < [3,] 0.000000 0.0000 0.00000 0.000000 199.3773 10.125075 14.07446 1.361295
  < [4,] 4.952285 179.5948 22.80712 0.000000 482.6783 0.000000 89.43248 0.000000
  < [5,] 25.439071 270.5018 106.15868 2.054041 0.0000 0.000000 75.67227 1.501258
  < [6,] 5.020272 274.2270 38.39652 0.000000 0.0000 0.000000 0.00000 0.000000
  < [,115] [,116] [,117] [,118] [,119] [,120] [,121]
  < [1,] 0.000000 0.000000 4.531725 0.000000 0.00000 0.00000 0.000000
  < [2,] 0.000000 5.104558 5.262544 0.000000 0.00000 0.00000 0.000000
  < [3,] 0.000000 38.983152 10.434349 0.000000 0.00000 0.00000 0.000000
  < [4,] 7.147122 11.642397 0.000000 4.930563 12.11852 0.00000 0.000000
  < [5,] 5.822955 0.000000 0.000000 68.353075 0.00000 0.00000 0.000000
  < [6,] 10.483027 0.000000 0.000000 17.950195 0.00000 14.78211 4.114816
  < [,122] [,123] [,124] [,125] [,126] [,127] [,128] [,129]
  < [1,] 0.000000 0.0000000 0.000000 0.000000 6.527887 1.093191 0.000000 1.617859
  < [2,] 0.000000 0.0000000 5.520493 0.000000 1.258643 0.000000 0.000000 1.670227
  < [3,] 0.000000 0.0000000 5.380504 0.000000 0.000000 0.000000 0.000000 0.000000
  < [4,] 0.451558 0.0000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000
  < [5,] 0.000000 0.0000000 0.000000 17.847963 0.000000 10.652646 2.862917 0.000000
  < [6,] 0.000000 0.8339799 0.000000 5.015895 0.000000 0.000000 1.827326 0.000000
  < [,130] [,131] [,132] [,133] [,134] [,135] [,136]
  < [1,] 0.0000000 0.000000 0.0000000 0.000000 0.000000 0.00000 0.00000
  < [2,] 0.0000000 0.000000 0.0000000 0.000000 0.000000 0.00000 0.00000
  < [3,] 0.0000000 0.000000 0.0000000 7.442317 8.463187 0.00000 0.00000
  < [4,] 0.0000000 0.000000 0.0000000 11.516873 9.638161 0.00000 23.27923
  < [5,] 0.2387701 2.056186 0.9576457 0.000000 0.000000 36.26947 559.43808
  < [6,] 1.5242211 1.874754 1.7932307 0.000000 0.000000 32.01422 0.00000
  < [,137] [,138] [,139] [,140] [,141] [,142] [,143] [,144]
  < [1,] 6.7065902 0.000000 0.000000 0.000000 0.00000 0.00000 0.000000 0.0000000
  < [2,] 0.4898873 0.000000 0.000000 0.000000 0.00000 0.00000 3.211786 0.0000000
  < [3,] 0.0000000 0.000000 0.000000 0.000000 0.00000 0.00000 0.000000 0.0000000
  < [4,] 0.0000000 1.908978 1.234937 0.000000 42.65477 0.00000 0.000000 0.4583918
  < [5,] 0.0000000 0.000000 0.000000 1.459762 0.00000 23.20276 0.000000 0.0000000
  < [6,] 0.0000000 0.000000 0.000000 0.000000 0.00000 0.00000 0.000000 0.0000000
  ---
  > [,78] [,79] [,80] [,81] [,82] [,83] [,84]
  > [1,] 0.000000 0.000000 0.000000 0.0000000 0.0000000 0.000000 0.000000
  > [2,] 0.000000 0.000000 0.000000 0.0000000 0.1548590 0.000000 0.000000
  > [3,] 0.000000 2.206035 0.000000 1.7816330 0.7675381 0.994798 0.000000
  > [4,] 0.000000 0.958365 0.000000 0.5883424 0.0000000 64.694774 0.000000
  > [5,] 0.000000 0.000000 4.073145 0.0000000 0.0000000 0.000000 5.592687
  > [6,] 1.388640 0.000000 2.232838 0.0000000 0.0000000 0.000000 5.749486
  > [,85] [,86] [,87] [,88] [,89] [,90] [,91]
  > [1,] 0.0000000 4.114957 0.000000 0.00000 5.709805 42.39022 0.0000000
  > [2,] 0.0000000 119.898059 0.000000 12.88441 8.800875 31.64993 0.9771071
  > [3,] 0.0000000 62.177392 144.153967 764.64149 16.274348 0.00000 1.0832240
  > [4,] 0.7237579 0.000000 39.056608 22.09675 0.000000 47.00413 3.4273383
  > [5,] 0.2872582 0.000000 4.721707 19.18309 1.444741 0.00000 0.0000000
  > [6,] 0.0000000 0.000000 0.000000 0.00000 0.000000 0.00000 6.3784003
  > [,92] [,93] [,94] [,95] [,96] [,97] [,98]
  > [1,] 0.000000 0.0000000 2.13847796 0.00000 0.000000 0.000000 0.00000
  > [2,] 0.000000 0.0000000 0.56435938 19.81987 0.000000 0.000000 0.00000
  > [3,] 1.128364 2.1739064 0.96561250 0.00000 0.918697 1.009141 0.00000
  > [4,] 2.121247 12.0661980 0.00000000 0.00000 0.000000 0.000000 0.00000
  > [5,] 20.916254 0.4321756 0.00000000 0.00000 0.000000 0.000000 10.57284
  > [6,] 6.226726 4.5634477 0.07314588 0.00000 0.000000 0.000000 0.00000
  > [,99] [,100] [,101] [,102] [,103] [,104] [,105]
  > [1,] 0.000000 0.000000 0.000000 0.00000 0.00000 20.839191 95.213457
  > [2,] 0.000000 0.000000 0.000000 0.00000 0.00000 1.886432 16.094048
  > [3,] 2.634697 1.225024 2.627345 0.00000 0.00000 4.057996 8.075579
  > [4,] 0.000000 1.247676 15.378599 57.85269 19.39789 0.000000 0.000000
  > [5,] 0.000000 0.000000 0.000000 19.39938 28.51305 0.000000 0.000000
  > [6,] 0.000000 0.000000 0.000000 0.00000 0.00000 0.000000 0.000000
  > [,106] [,107] [,108] [,109] [,110] [,111] [,112]
  > [1,] 0.0000000 0.000000 0.0000 0.00000 2.477603 0.0000 1.426660
  > [2,] 2.3226696 0.000000 0.0000 0.00000 4.015401 134.4282 2.171732
  > [3,] 0.3911095 0.000000 0.0000 0.00000 0.000000 199.3773 10.125075
  > [4,] 1.9842398 4.952285 179.5948 22.80712 0.000000 482.6783 0.000000
  > [5,] 0.0000000 25.439071 270.5018 106.15868 2.054041 0.0000 0.000000
  > [6,] 0.0000000 5.020272 274.2270 38.39652 0.000000 0.0000 0.000000
  > [,113] [,114] [,115] [,116] [,117] [,118] [,119]
  > [1,] 0.00000 0.000000 0.000000 0.000000 4.531725 0.000000 0.00000
  > [2,] 0.00000 1.360849 0.000000 5.104558 5.262544 0.000000 0.00000
  > [3,] 14.07446 1.361295 0.000000 38.983152 10.434349 0.000000 0.00000
  > [4,] 89.43248 0.000000 7.147122 11.642397 0.000000 4.930563 12.11852
  > [5,] 75.67227 1.501258 5.822955 0.000000 0.000000 68.353075 0.00000
  > [6,] 0.00000 0.000000 10.483027 0.000000 0.000000 17.950195 0.00000
  > [,120] [,121] [,122] [,123] [,124] [,125] [,126] [,127]
  > [1,] 0.00000 0.000000 0.000000 0.0000000 0.000000 0.000000 6.527887 1.093191
  > [2,] 0.00000 0.000000 0.000000 0.0000000 5.520493 0.000000 1.258643 0.000000
  > [3,] 0.00000 0.000000 0.000000 0.0000000 5.380504 0.000000 0.000000 0.000000
  > [4,] 0.00000 0.000000 0.451558 0.0000000 0.000000 0.000000 0.000000 0.000000
  > [5,] 0.00000 0.000000 0.000000 0.0000000 0.000000 17.847963 0.000000 10.652646
  > [6,] 14.78211 4.114816 0.000000 0.8339799 0.000000 5.015895 0.000000 0.000000
  > [,128] [,129] [,130] [,131] [,132] [,133] [,134] [,135]
  > [1,] 0.000000 1.617859 0.0000000 0.000000 0.0000000 0.000000 0.000000 0.00000
  > [2,] 0.000000 1.670227 0.0000000 0.000000 0.0000000 0.000000 0.000000 0.00000
  > [3,] 0.000000 0.000000 0.0000000 0.000000 0.0000000 7.442317 8.463187 0.00000
  > [4,] 0.000000 0.000000 0.0000000 0.000000 0.0000000 11.516873 9.638161 0.00000
  > [5,] 2.862917 0.000000 0.2387701 2.056186 0.9576457 0.000000 0.000000 36.26947
  > [6,] 1.827326 0.000000 1.5242211 1.874754 1.7932307 0.000000 0.000000 32.01422
  > [,136] [,137] [,138] [,139] [,140] [,141] [,142] [,143]
  > [1,] 0.00000 6.7065902 0.000000 0.000000 0.000000 0.00000 0.00000 0.000000
  > [2,] 0.00000 0.4898873 0.000000 0.000000 0.000000 0.00000 0.00000 3.211786
  > [3,] 0.00000 0.0000000 0.000000 0.000000 0.000000 0.00000 0.00000 0.000000
  > [4,] 23.27923 0.0000000 1.908978 1.234937 0.000000 42.65477 0.00000 0.000000
  > [5,] 559.43808 0.0000000 0.000000 0.000000 1.459762 0.00000 23.20276 0.000000
  > [6,] 0.00000 0.0000000 0.000000 0.000000 0.000000 0.00000 0.00000 0.000000
  > [,144]
  > [1,] 0.0000000
  > [2,] 0.0000000
  > [3,] 0.0000000
  > [4,] 0.4583918
  > [5,] 0.0000000
  > [6,] 0.0000000
  OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [19s/19s] OK
  Running ‘prabclustests.R’ [19s/19s]
  Comparing ‘prabclustests.Rout’ to ‘prabclustests.Rout.save’ ...4,8d3
  < by using mclust, invoked on its own or through another package,
  < you accept the license agreement in the mclust LICENSE file
  < and at http://www.stat.washington.edu/mclust/license.txt
  <
  <
  119,121c114,117
  < Checking rgeos availability: FALSE
  < Note: when rgeos is not available, polygon geometry computations in maptools depend on gpclib,
  < which has a restricted licence. It is disabled by default;
  ---
  >
  > Note: polygon geometry computations in maptools
  > depend on the package gpclib, which has a
  > restricted licence. It is disabled by default;
  123c119,122
  < deldir 0.0-16
  ---
  >
  > Checking rgeos availability as gpclib substitute:
  > FALSE
  > deldir 0.0-12
  198c197
  < Group 51 mean for null data: 0.7071874 , range: 0.6229438 0.8590051
  ---
  > Group 51 mean for null data: 0.7071874 , range: 0.6229438 0.859005
  213c212
  < Group 88 mean for null data: 0.6213165 , range: 0.3688763 0.7708729
  ---
  > Group 88 mean for null data: 0.6213165 , range: 0.3688763 0.770873
  231c230
  < Group 125 mean for null data: 0.3744992 , range: 0.268023 0.4778988
  ---
  > Group 125 mean for null data: 0.3744992 , range: 0.2680230 0.4778988
  277c276
  < -0.635752465 -0.433019911 -1.328899646 -2.276661196 -2.350079254 -1.702264144
  ---
  > -0.635752465 -0.433019911 -1.328899646 -2.276661196 -2.350079254 -1.702264143
  346c345
  < -0.635752465 -0.433019911 -1.328899646 -2.276661196 -2.350079254 -1.702264144
  ---
  > -0.635752465 -0.433019911 -1.328899646 -2.276661196 -2.350079254 -1.702264143
  384,516c383,515
  < [,9] [,10] [,11] [,12] [,13] [,14] [,15]
  < [1,] 0.000000 0.00000 0.00000 0.00000 0.000000 0.000000 0.000000
  < [2,] 0.872144 0.00000 0.00000 0.00000 0.000000 17.264135 0.000000
  < [3,] 20.788975 24.60735 11.60547 34.05810 0.000000 2.059188 0.000000
  < [4,] 0.000000 23.26572 0.00000 155.45349 42.206031 16.020798 6.715664
  < [5,] 0.000000 0.00000 28.54575 98.76841 9.120021 0.000000 5.517595
  < [6,] 0.000000 0.00000 0.00000 0.00000 13.113807 0.000000 0.393891
  < [,16] [,17] [,18] [,19] [,20] [,21] [,22]
  < [1,] 45.98460 0.00000 1.5813109 4.265284 0.0000000 4.373987 0.02750444
  < [2,] 78.69389 66.12347 0.9039927 2.033551 0.0000000 1.376185 0.18734749
  < [3,] 79.33315 16.20181 7.5171231 52.309196 3.3712033 10.580475 0.25754741
  < [4,] 76.27972 256.47451 4.2534117 0.000000 8.8407278 1.497142 0.30804788
  < [5,] 0.00000 236.79550 0.0000000 0.000000 0.7109072 0.000000 0.00000000
  < [6,] 0.00000 0.00000 0.0000000 0.000000 102.8374630 0.000000 0.00000000
  < [,23] [,24] [,25] [,26] [,27] [,28] [,29]
  < [1,] 0.7427688 75.98959 0.00000 0.00000 0.00000 11.15323 9.985715
  < [2,] 2.9679678 43.73625 75.26011 125.78241 63.26961 94.39666 9.428561
  < [3,] 4.1498599 96.42656 5493.44382 231.69684 509.11685 25.84498 210.332487
  < [4,] 7.9002657 81.30777 53.57238 88.55208 19.71331 32.38942 23.837362
  < [5,] 0.0000000 19.40617 414.47593 50.89230 12.55093 25.43070 81.213066
  < [6,] 0.0000000 0.00000 245.77183 1378.25762 265.33266 0.00000 0.000000
  < [,30] [,31] [,32] [,33] [,34] [,35] [,36]
  < [1,] 14.121176 0.000000 0.000000 59.242539 230.22061 83.90570 89.96098
  < [2,] 20.060187 54.326617 120.736258 6.295851 106.81992 70.27833 33.65442
  < [3,] 3.177522 173.436699 8.645773 39.348036 303.18169 225.23547 23.43407
  < [4,] 32.930162 64.070875 80.033955 29.136913 485.75488 111.32845 71.14204
  < [5,] 42.113115 33.319912 84.175207 13.120489 19.02407 18.31206 206.22708
  < [6,] 0.000000 4.743083 72.658156 0.000000 0.00000 0.00000 0.00000
  < [,37] [,38] [,39] [,40] [,41] [,42] [,43]
  < [1,] 0.000000 0.000000 0.00000 41.97810 0.0000000 24.170744 0.00000
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• checking PDF version of manual ... OK
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  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/prabclus.Rcheck/00check.log’
  for details.