Check results for 'optmatch'

using R Under development (unstable) (2012-02-06 r58287)
using platform: i686-pc-linux-gnu (32-bit)
using session charset: UTF-8
checking for file ‘optmatch/DESCRIPTION’ ... OK
this is package ‘optmatch’ version ‘0.7-1’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking whether package ‘optmatch’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
File ‘optmatch/R/zzz.R’:
.onLoad calls:
cat("You're loading optmatch, by Ben Hansen, a package for flexible\n", "and optimal matching. Important license information:\n", "The optmatch package makes essential use of D. P. Bertsekas\n", "and P. Tseng's RELAX-IV algorithm and code, as well as\n", "Bertsekas' AUCTION algorithm and code.\n", "Bertsekas and Tseng freely permit their software to be used for\n", "research purposes, but non-research uses, including the use of it\n", "to 'satisfy in any part commercial delivery requirements to\n", "government or industry,' require a special agreement with them.\n", "By extension, this requirement applies to any use of the \n", "fullmatch() function. (If you are using another package that has\n", "loaded optmatch, then you will probably be using fullmatch indirectly.)\n", "For more information, enter relaxinfo() at the command line\n")
writeLines(paste("You're loading optmatch, a package for flexible, optimal matching.\n\n ", "Important license information: This package makes use of Bertsekas\nand ", "Tseng's RELAX-IV algorithm and code, as well as Bertsekas'\nAUCTION ", "algorithm and code. Bertsekas and Tseng freely permit\ntheir ", "software to be used for research purposes, but non-research\nuses, ", "including uses to 'satisfy in any part commercial delivery\nrequirements ", "to government or industry,' require a special agreement.\nBy ", "extension, this requirement applies to most any use of the \nfullmatch() ", "function. (If you are using another package that has\nloaded optmatch, ", "then you may be using fullmatch indirectly.)\n\nFor ", "more information, enter relaxinfo() at the command line.\n To ", "dismiss this message, press 'q'. -B. Hansen", sep = ""), outConn)

Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in ?.onAttach.
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... NOTE
File ‘/home/hornik/tmp/R.check/r-devel/Work/build/Packages/optmatch/libs/optmatch.so’:
Found ‘_gfortran_st_write’, possibly from ‘write’ (Fortran), ‘print’
(Fortran)
Found ‘_gfortran_stop_string’, possibly from ‘stop’ (Fortran)

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console. The detected symbols
are linked into the code but might come from libraries and not actually
be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
checking examples ... [1s/1s] OK
checking for unstated dependencies in tests ... WARNING
‘library’ or ‘require’ call not declared from: ‘biglm’
checking tests ... [5s/5s] OK
Running ‘caliper.R’ [0s/0s]
Running ‘fill.NAs.R’ [0s/0s]
Running ‘fullmatch-helpers.R’ [0s/0s]
Comparing ‘fullmatch-helpers.Rout’ to ‘fullmatch-helpers.Rout.save’ ... OK
Running ‘fullmatch.R’ [0s/0s]
Comparing ‘fullmatch.Rout’ to ‘fullmatch.Rout.save’ ... OK
Running ‘mahal-dist.R’ [0s/0s]
Comparing ‘mahal-dist.Rout’ to ‘mahal-dist.Rout.save’ ... OK
Running ‘maxcontrolscap-tests.R’ [0s/0s]
Comparing ‘maxcontrolscap-tests.Rout’ to ‘maxcontrolscap-tests.Rout.save’ ... OK
Running ‘mdist.R’ [0s/0s]
Running ‘moremethods.optmatch-tests.R’ [0s/0s]
Comparing ‘moremethods.optmatch-tests.Rout’ to ‘moremethods.optmatch-tests.Rout.save’ ... OK
Running ‘pairmatch-tests.R’ [0s/0s]
Comparing ‘pairmatch-tests.Rout’ to ‘pairmatch-tests.Rout.save’ ...43c43
< m.6 m.6 m.1 m.3 m.2 <NA> m.1 m.5 m.3 m.3 m.4 m.9 m.1 m.7 m.2 m.8
---
> m.8 m.7 m.2 m.5 m.4 <NA> m.2 m.9 m.6 m.6 m.7 m.3 m.3 m.10 m.4 m.1
45c45
< m.9 m.4 m.8 m.5 m.2 m.6 m.7 m.7 m.10 m.5 m.4 <NA> m.10 m.8 m.9 m.10
---
> m.2 m.7 m.1 m.8 m.4 m.9 m.5 m.10 m.6 m.8 m.9 <NA> m.10 m.1 m.3 m.5
Running ‘pscore-dist.R’ [0s/0s]
Comparing ‘pscore-dist.Rout’ to ‘pscore-dist.Rout.save’ ... OK
Running ‘stratumStructure-tests.R’ [0s/0s]
Comparing ‘stratumStructure-tests.Rout’ to ‘stratumStructure-tests.Rout.save’ ... OK
Running ‘summary.optmatch-tests.R’ [1s/1s]
Comparing ‘summary.optmatch-tests.Rout’ to ‘summary.optmatch-tests.Rout.save’ ...76c76
< 0.0168 0.9250 102.0000 103.0000
---
> 0.0168 1.2100 101.0000 103.0000
93c93
< Package SparseM (0.91) loaded.
---
> Package SparseM (0.85) loaded.
156c156
< 0.0419 0.7680 1.5300 1.6600
---
> 0.0415 0.9140 1.5100 1.6100
159c159
< 9.9 9 0.358
---
> 9.83 9 0.365
checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/optmatch.Rcheck/00check.log’
for details.