• using R Under development (unstable) (2012-02-06 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘moduleColor/DESCRIPTION’ ... OK
• this is package ‘moduleColor’ version ‘1.08-1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘moduleColor’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘moduleColor/R/Functions.R’:
  .onLoad calls:
  cat(paste("Package moduleColor, version", .moduleColorOptions$version, "revision date", .moduleColorOptions$revisionDate, "\n"))
  cat(paste(" Active module eigengene name prefix:", .moduleColorOptions$MEprefix, "\n"))
  
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  multiSetMEs: warning in moduleEigengenes(expr = exprData[[set]]$data,
  color = setColors, impute = impute, nPC = nPC, align = align,
  excludeGrey = excludeGrey, grey = grey, trapErrors = trapErrors,
  subHubs = subHubs, returnValidOnly = FALSE, softPower = softPower,
  verbose = verbose - 1, indent = indent + 1): partial argument match
  of 'color' to 'colors'
  multiSetMEs: warning in moduleEigengenes(expr = exprData[[set]]$data[,
  useGenes], color = setColors, impute = impute, nPC = nPC, align =
  align, excludeGrey = excludeGrey, grey = grey, trapErrors =
  trapErrors, subHubs = subHubs, returnValidOnly = FALSE, softPower =
  softPower, verbose = verbose - 1, indent = indent + 1): partial
  argument match of 'color' to 'colors'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [0s/0s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/moduleColor.Rcheck/00check.log’
  for details.