• using R Under development (unstable) (2012-02-06 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘mlmRev/DESCRIPTION’ ... OK
• this is package ‘mlmRev’ version ‘1.0-1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘mlmRev’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files should probably not be installed:
  ‘myVignette.sty’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... [11s/11s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [44s/45s] OK
  Running ‘guImmun.R’ [29s/29s]
  Comparing ‘guImmun.Rout’ to ‘guImmun.Rout.save’ ...5,17d4
  < Attaching package: 'Matrix'
  <
  < The following object(s) are masked from 'package:base':
  <
  < det
  <
  <
  < Attaching package: 'lme4'
  <
  < The following object(s) are masked from 'package:stats':
  <
  < AIC, BIC
  <
  39c26
  < mom25pY -0.1284 0.1543 -0.83 0.4054
  ---
  > mom25pY -0.1284 0.1543 -0.83 0.4055
  43c30
  < ethnN -0.1132 0.3125 -0.36 0.7173
  ---
  > ethnN -0.1131 0.3125 -0.36 0.7173
  46c33
  < momEdS 0.3016 0.3119 0.97 0.3334
  ---
  > momEdS 0.3016 0.3119 0.97 0.3335
  52c39
  < pcInd81 -0.8574 0.3257 -2.63 0.0085 **
  ---
  > pcInd81 -0.8572 0.3257 -2.63 0.0085 **
  94,99c81,86
  < mom25pY -0.1360 0.1537 -0.88 0.37645
  < ord23 -0.1374 0.1605 -0.86 0.39168
  < ord46 0.1556 0.1977 0.79 0.43142
  < ord7p 0.2404 0.2464 0.98 0.32909
  < ethnN -0.2206 0.3095 -0.71 0.47605
  < ethnS -0.0784 0.2311 -0.34 0.73443
  ---
  > mom25pY -0.1359 0.1537 -0.88 0.37652
  > ord23 -0.1375 0.1605 -0.86 0.39166
  > ord46 0.1556 0.1977 0.79 0.43148
  > ord7p 0.2404 0.2464 0.98 0.32913
  > ethnN -0.2206 0.3095 -0.71 0.47600
  > ethnS -0.0784 0.2311 -0.34 0.73438
  101,102c88,89
  < momEdS 0.3876 0.2766 1.40 0.16113
  < momWorkY 0.2721 0.1283 2.12 0.03389 *
  ---
  > momEdS 0.3876 0.2766 1.40 0.16115
  > momWorkY 0.2721 0.1283 2.12 0.03390 *
  104c91
  < pcInd81 -0.8354 0.3251 -2.57 0.01017 *
  ---
  > pcInd81 -0.8354 0.3251 -2.57 0.01018 *
  118c105
  < mom (Intercept) 1.2410 1.1140
  ---
  > mom (Intercept) 1.2411 1.1140
  124c111
  < (Intercept) -0.6971 0.2687 -2.59 0.00948 **
  ---
  > (Intercept) -0.6971 0.2687 -2.59 0.00947 **
  126,128c113,115
  < mom25pY 0.0258 0.1163 0.22 0.82417
  < ethnN -0.2172 0.3068 -0.71 0.47894
  < ethnS -0.0812 0.2293 -0.35 0.72324
  ---
  > mom25pY 0.0258 0.1163 0.22 0.82405
  > ethnN -0.2172 0.3068 -0.71 0.47896
  > ethnS -0.0812 0.2294 -0.35 0.72324
  130c117
  < momEdS 0.3266 0.2708 1.21 0.22783
  ---
  > momEdS 0.3266 0.2708 1.21 0.22778
  133c120
  < pcInd81 -0.8367 0.3220 -2.60 0.00937 **
  ---
  > pcInd81 -0.8366 0.3220 -2.60 0.00938 **
  Running ‘lmerTest.R’ [12s/12s]
  Comparing ‘lmerTest.Rout’ to ‘lmerTest.Rout.save’ ...6,18d5
  < Attaching package: 'Matrix'
  <
  < The following object(s) are masked from 'package:base':
  <
  < det
  <
  <
  < Attaching package: 'lme4'
  <
  < The following object(s) are masked from 'package:stats':
  <
  < AIC, BIC
  <
  178c165
  < fm3 7 16519 16567 -8253 0.0 0 1
  ---
  > fm3 7 16519 16567 -8253 0.0 0 <2e-16
  219,220c206,207
  < school (Intercept) 0.08583 0.293
  < Residual 0.56253 0.750
  ---
  > school (Intercept) 0.08583 0.2930
  > Residual 0.56253 0.7500
  304c291
  < Subject (Intercept) 64.0346 8.0022
  ---
  > Subject (Intercept) 64.0345 8.0022
  361c348
  < fm08 12 649.4 690.8 -312.7 0 0 <2e-16
  ---
  > fm08 12 649.4 690.8 -312.7 1.68e-06 0 <2e-16
  363c350
  < + logLik(fm08, REML=FALSE), tol=1e-07))
  ---
  > + logLik(fm08, REML=FALSE)))
  Running ‘versions.R’ [3s/3s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [31s/31s] OK
• checking re-building of vignette PDFs ... [25s/26s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/mlmRev.Rcheck/00check.log’
  for details.