• using R Under development (unstable) (2012-02-04 r58267)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘mixtools/DESCRIPTION’ ... OK
• this is package ‘mixtools’ version ‘0.4.4’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
• checking for executable files ... OK
• checking whether package ‘mixtools’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘mixtools/R/zzz.R’:
  .First.lib calls:
  cat(pkg, "package version", info[, "Version"], " Released", info[, "Date"], "\n")
  cat("Type help(package=\"mixtools\") to get started.\n")
  cat("This package is based upon work supported by the National Science Foundation under Grant No. SES-0518772.\n")
  
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  boot.comp: warning in try(repnormmixEM(x = y, k = (i + 1), arbmean =
  arbmean, arbvar = arbvar, ...), silen = TRUE): partial argument match
  of 'silen' to 'silent'
  normmixrm.sim: warning in sample(m, n, rep = TRUE, prob = lambda):
  partial argument match of 'rep' to 'replace'
  rmvnormmix: warning in sample(m, n, rep = TRUE, prob = lambda): partial
  argument match of 'rep' to 'replace'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data file(s) saved inefficiently:
  size ASCII compress
  RanEffdata.RData 124Kb FALSE none
  
  Note: significantly better compression could be obtained
  by using R CMD build --resave-data
  old_size new_size compress
  RanEffdata.RData 124Kb 62Kb xz
  RodFramedata.RData 33Kb 6Kb bzip2
  Waterdata.RData 17Kb 4Kb bzip2
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... NOTE
  ‘qpdf’ made some significant size reductions:
  compacted ‘vignette.pdf’ from 667Kb to 348Kb
  consider running tools::compactPDF() on these files
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [77s/77s] WARNING
  Found the following significant warnings:
  
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Deprecated functions may be defunct as soon as of the next release of
  R.
  See ?Deprecated.
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [89s/89s] OK
• checking re-building of vignette PDFs ... [92s/92s] OK
• checking PDF version of manual ... OK
  WARNING: There were 2 warnings.
  NOTE: There were 3 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/mixtools.Rcheck/00check.log’
  for details.