- using R Under development (unstable) (2012-02-06 r58287)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘maxLik/DESCRIPTION’ ... OK
- this is package ‘maxLik’ version ‘1.1-0’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘maxLik’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
logLikGrad: no visible binding for global variable ‘lastFuncParam’
logLikGrad: no visible binding for global variable ‘lastFuncGrad’
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [1s/1s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [144s/144s] OK
Running ‘BFGSR.R’ [0s/0s]
Comparing ‘BFGSR.Rout’ to ‘BFGSR.Rout.save’ ...28c28
< Function value: 1.183e+24
---
> Function value: 8.104e+25
31,33c31,33
< [1,] 5.9320e+09 0
< [2,] 2.9226e+10 0
< [3,] 1.0872e+12 0
---
> [1,] 6.2506e+12 0
> [2,] 6.2506e+12 0
> [3,] -1.7026e+12 0
47c47
< Function value: 2.4119e+21
---
> Function value: 2.4071e+21
50,52c50,52
< [1,] 8877158828 0
< [2,] 33431909639 0
< [3,] -2635180904 0
---
> [1,] 7684926721 0
> [2,] 33806418069 0
> [3,] -2319374069 0
66c66
< Number of iterations: 20
---
> Number of iterations: 26
72,73c72,73
< [1,] -1.0270e-07 2.0539e-07
< [2,] -9.0604e-08 1.8119e-07
---
> [1,] 1.8402e-07 -3.6804e-07
> [2,] 1.8402e-07 -3.6804e-07
95c95
< Number of iterations: 11
---
> Number of iterations: 13
101,102c101,102
< [1,] 0.49988 -0.22308
< [2,] 0.50009 -0.22318
---
> [1,] 0.49999 -0.22313
> [2,] 0.49999 -0.22313
108c108
< 5 outer iterations, barrier value 1.0137e-09
---
> 5 outer iterations, barrier value 6.5361e-10
Running ‘constraints.R’ [82s/82s]
Comparing ‘constraints.Rout’ to ‘constraints.Rout.save’ ...353,355c353,355
< [1,] 0.5000 0.0256 19.5 <2e-16 ***
< [2,] -1.0360 0.0581 -17.8 <2e-16 ***
< [3,] 1.0106 0.0584 17.3 <2e-16 ***
---
> [1,] 0.5000 0.0257 19.5 <2e-16 ***
> [2,] -1.0360 0.0582 -17.8 <2e-16 ***
> [3,] 1.0106 0.0585 17.3 <2e-16 ***
373,374c373,374
< iter 5 value 3739.836050
< iter 6 value 3739.669310
---
> iter 5 value 3739.836051
> iter 6 value 3739.669311
376,395c376,398
< iter 8 value 3739.342554
< iter 9 value 3739.271535
< iter 10 value 3674.195391
< iter 11 value 3671.068131
< iter 12 value 3626.157704
< iter 13 value 3589.946385
< iter 14 value 3552.974009
< iter 15 value 3551.811720
< iter 16 value 3551.806145
< iter 17 value 3551.796622
< iter 18 value 3551.796375
< iter 19 value 3551.782439
< iter 20 value 3551.776228
< iter 21 value 3551.776073
< iter 22 value 3551.775690
< iter 23 value 3551.774437
< iter 24 value 3551.773439
< iter 24 value 3551.773426
< iter 24 value 3551.773425
< final value 3551.773425
---
> iter 8 value 3739.342555
> iter 9 value 3739.271536
> iter 10 value 3674.195892
> iter 11 value 3671.068754
> iter 12 value 3626.179862
> iter 13 value 3589.958026
> iter 14 value 3552.974654
> iter 15 value 3551.811769
> iter 16 value 3551.806189
> iter 17 value 3551.796655
> iter 18 value 3551.796407
> iter 19 value 3551.782460
> iter 20 value 3551.776241
> iter 21 value 3551.776085
> iter 22 value 3551.775694
> iter 23 value 3551.775004
> iter 24 value 3551.774150
> iter 25 value 3551.773955
> iter 26 value 3551.773847
> iter 27 value 3551.773493
> iter 27 value 3551.773487
> iter 27 value 3551.773479
> final value 3551.773479
400c403
< BFGS maximisation, 126 iterations
---
> BFGS maximisation, 136 iterations
407,408c410,411
< [2,] -1.0360 0.0581 -17.8 <2e-16 ***
< [3,] 1.0111 0.0584 17.3 <2e-16 ***
---
> [2,] -1.0357 0.0581 -17.8 <2e-16 ***
> [3,] 1.0112 0.0584 17.3 <2e-16 ***
414c417
< 1 outer iterations, barrier value -8.0817e-05
---
> 1 outer iterations, barrier value -7.6798e-05
487c490
< initial value 3560.907807
---
> initial value 3560.907808
490c493
< iter 4 value 3558.554875
---
> iter 4 value 3558.554874
510c513
< initial value 3595.363567
---
> initial value 3595.363566
522c525
< initial value 3575.687740
---
> initial value 3575.687741
890c893
< initial value 3561.161194
---
> initial value 3561.161193
900,902c903,905
< initial value 3623.062833
< iter 2 value 3595.991939
< iter 3 value 3595.709045
---
> initial value 3623.062827
> iter 2 value 3595.991937
> iter 3 value 3595.709044
911c914
< initial value 3706.731798
---
> initial value 3706.731799
922,925c925,928
< initial value 3633.375253
< iter 2 value 3610.546095
< iter 3 value 3610.527291
< iter 4 value 3608.619658
---
> initial value 3633.375248
> iter 2 value 3610.546094
> iter 3 value 3610.527290
> iter 4 value 3608.619657
933c936
< initial value 3611.567446
---
> initial value 3611.567445
936c939
< iter 4 value 3609.093783
---
> iter 4 value 3609.093787
944c947
< initial value 3609.085219
---
> initial value 3609.085218
990c993
< initial value 3561.161194
---
> initial value 3561.161193
1000,1002c1003,1005
< initial value 3623.062833
< iter 2 value 3595.991939
< iter 3 value 3595.709045
---
> initial value 3623.062827
> iter 2 value 3595.991937
> iter 3 value 3595.709044
1011c1014
< initial value 3706.731798
---
> initial value 3706.731799
1022,1025c1025,1028
< initial value 3633.375253
< iter 2 value 3610.546095
< iter 3 value 3610.527291
< iter 4 value 3608.619658
---
> initial value 3633.375248
> iter 2 value 3610.546094
> iter 3 value 3610.527290
> iter 4 value 3608.619657
1033c1036
< initial value 3611.567446
---
> initial value 3611.567445
1036c1039
< iter 4 value 3609.093783
---
> iter 4 value 3609.093787
1044c1047
< initial value 3609.085219
---
> initial value 3609.085218
1141c1144
< [1,] -1.3034 0.0458 -28.5 <2e-16 ***
---
> [1,] -1.3034 0.0458 -28.4 <2e-16 ***
1179c1182
< BFGS maximisation, 40 iterations
---
> BFGS maximisation, 38 iterations
1216c1219
< BFGS maximisation, 40 iterations
---
> BFGS maximisation, 38 iterations
Running ‘examples.R’ [1s/1s]
Comparing ‘examples.Rout’ to ‘examples.Rout.save’ ... OK
Running ‘finalHessian.R’ [1s/1s]
Comparing ‘finalHessian.Rout’ to ‘finalHessian.Rout.save’ ... OK
Running ‘fitExpDist.R’ [2s/2s]
Comparing ‘fitExpDist.Rout’ to ‘fitExpDist.Rout.save’ ...55c55
< [1] -4.2261e-07
---
> [1] -3.8042e-07
59c59
< [1,] -22.329
---
> [1,] -22.332
187,188c187,188
< [1] "Component 3: Mean relative difference: 0.024974"
< [2] "Component 4: Mean relative difference: 0.00015908"
---
> [1] "Component 3: Mean relative difference: 0.48766"
> [2] "Component 4: Mean relative difference: 0.00047702"
195,196c195,196
< [1] "Component 3: Mean relative difference: 7.9742"
< [2] "Component 4: Mean relative difference: 0.00036976"
---
> [1] "Component 3: Mean relative difference: 7.2779"
> [2] "Component 4: Mean relative difference: 0.00021071"
233,234c233,234
< [1] "Component 2: Mean relative difference: 3.5848e-08"
< [2] "Component 3: Mean relative difference: 1.3306"
---
> [1] "Component 2: Mean relative difference: 3.4951e-08"
> [2] "Component 3: Mean relative difference: 1.2976"
236,237c236,237
< [4] "Component 4: Mean relative difference: 0.027613"
< [5] "Component 8: Mean relative difference: 5.0093e-08"
---
> [4] "Component 4: Mean relative difference: 0.027776"
> [5] "Component 8: Mean relative difference: 4.885e-08"
276,279c276,279
< [1] "Component 2: Mean relative difference: 2.972e-08"
< [2] "Component 3: Mean relative difference: 1.4328"
< [3] "Component 4: Mean relative difference: 0.00079491"
< [4] "Component 7: Mean relative difference: 4.1207e-08"
---
> [1] "Component 2: Mean relative difference: 2.8629e-08"
> [2] "Component 3: Mean relative difference: 1.3939"
> [3] "Component 4: Mean relative difference: 0.00063593"
> [4] "Component 7: Mean relative difference: 3.9649e-08"
283c283
< [1] "Component 3: Mean relative difference: 0.0031934"
---
> [1] "Component 3: Mean relative difference: 0.000517"
290c290
< [1] "Component 3: Mean relative difference: 0.0037246"
---
> [1] "Component 3: Mean relative difference: 0.0072872"
332,334c332,334
< [1] "Component 2: Mean relative difference: 7.3494e-05"
< [2] "Component 3: Mean relative difference: 0.99988"
< [3] "Component 4: Mean relative difference: 0.00079491"
---
> [1] "Component 2: Mean relative difference: 7.3495e-05"
> [2] "Component 3: Mean relative difference: 0.99989"
> [3] "Component 4: Mean relative difference: 0.00047702"
347c347
< [2] "Component 4: Mean relative difference: 0.00057257"
---
> [2] "Component 4: Mean relative difference: 0.0004135"
383,386c383,385
< [1] "Component 2: Mean relative difference: 1.0121e-05"
< [2] "Component 3: Mean relative difference: 0.99912"
< [3] "Component 4: Mean relative difference: 0.00079491"
< [4] "Component 7: Mean relative difference: 1.4088e-05"
---
> [1] "Component 2: Mean relative difference: 1.0122e-05"
> [2] "Component 3: Mean relative difference: 0.99921"
> [3] "Component 7: Mean relative difference: 1.409e-05"
393,394c392,393
< [1] "Component 3: Mean relative difference: 6.1255e-06"
< [2] "Component 4: Mean relative difference: 0.00044576"
---
> [1] "Component 3: Mean relative difference: 6.7051e-06"
> [2] "Component 4: Mean relative difference: 0.00019046"
459c458
< as.Date, as.Date.numeric
---
> as.Date
542c541
< [1,] 4.4785
---
> [1,] 4.4778
560c559
< [1,] 4.475
---
> [1,] 4.4757
566c565
< [1,] 4.475
---
> [1,] 4.4778
582,583c581,582
< [1,] 0.043582
< [1] "Mean relative difference: 0.027613"
---
> [1,] 0.043568
> [1] "Mean relative difference: 0.027776"
606,607c605,606
< [1,] 0.043513
< [1] "Mean relative difference: 0.02843"
---
> [1,] 0.043526
> [1] "Mean relative difference: 0.028267"
614,615c613,614
< [1,] 0.043513
< [1] "Mean relative difference: 0.02843"
---
> [1,] 0.043568
> [1] "Mean relative difference: 0.027776"
Running ‘fitNormalDist.R’ [57s/57s]
Comparing ‘fitNormalDist.Rout’ to ‘fitNormalDist.Rout.save’ ...152c152
< Return code 1: gradient close to zero
---
> Return code 2: successive function values within tolerance limit
159c159
< Return code 1: gradient close to zero
---
> Return code 2: successive function values within tolerance limit
165c165
< sigma 1.816 0.128 14.2 < 2e-16 ***
---
> sigma 1.816 0.128 14.1 < 2e-16 ***
179c179
< sigma 1.6667
---
> sigma 1.6686
182,183c182,183
< mu -30.326 0.000
< sigma 0.000 -60.652
---
> mu -30.325964 -0.028422
> sigma -0.028422 -60.623506
196c196
< [1] 1
---
> [1] 2
198c198
< [1] "gradient close to zero"
---
> [1] "successive function values within tolerance limit"
201,202c201,202
< mu 0.032975 0.000000
< sigma 0.000000 0.016488
---
> mu 3.2975e-02 -1.5459e-05
> sigma -1.5459e-05 1.6495e-02
216c216
< sigma 1.816 0.128 14.1 < 2e-16 ***
---
> sigma 1.816 0.128 14.2 < 2e-16 ***
221,222c221,224
< [1] "Component 3: Mean relative difference: 1.1316"
< [2] "Component 4: Mean relative difference: 0.00093721"
---
> [1] "Component 3: Mean relative difference: 0.84467"
> [2] "Component 4: Mean relative difference: 0.0012492"
> [3] "Component 5: Mean relative difference: 0.5"
> [4] "Component 6: 1 string mismatch"
230c232
< [5,] 0.023568 -0.5495062
---
> [5,] 0.023568 -0.5495061
241c243
< [16,] 1.028310 1.3702714
---
> [16,] 1.028310 1.3702713
255c257
< [30,] 0.705181 0.3527860
---
> [30,] 0.705181 0.3527859
264c266
< [39,] -0.240252 -0.4456657
---
> [39,] -0.240252 -0.4456656
269c271
< [44,] 1.259879 2.3327770
---
> [44,] 1.259879 2.3327769
277c279
< [52,] -0.072101 -0.5410720
---
> [52,] -0.072101 -0.5410719
290c292
< [65,] -0.704447 0.3509051
---
> [65,] -0.704447 0.3509050
297c299
< [72,] -1.454463 3.2921828
---
> [72,] -1.454463 3.2921827
303c305
< [78,] -0.794716 0.5967267
---
> [78,] -0.794716 0.5967266
308c310
< [83,] -0.279468 -0.4086441
---
> [83,] -0.279468 -0.4086440
322,323c324,325
< [97,] 1.271018 2.3839863
< [98,] 0.874169 0.8375873
---
> [97,] 1.271018 2.3839862
> [98,] 0.874169 0.8375872
347,348c349,353
< [1] "Component 3: Mean relative difference: 1.0121"
< [2] "Component 4: Mean relative difference: 0.00063571"
---
> [1] "Component 2: Mean relative difference: 1.6411e-08"
> [2] "Component 3: Mean relative difference: 1.0078"
> [3] "Component 4: Mean relative difference: 0.00094782"
> [4] "Component 5: Mean relative difference: 0.5"
> [5] "Component 6: 1 string mismatch"
351,353c356,357
< [1] "Component 3: Mean relative difference: 0.98526"
< [2] "Component 4: Mean relative difference: 0.00030178"
< [3] "Component 11: Mean relative difference: 1.5624e-08"
---
> [1] "Component 3: Mean relative difference: 1.0502"
> [2] "Component 4: Mean relative difference: 0.00052447"
583,584c587,588
< [1] "Component 2: Mean relative difference: 2.6258e-07"
< [2] "Component 3: Mean relative difference: 34.092"
---
> [1] "Component 2: Mean relative difference: 2.472e-07"
> [2] "Component 3: Mean relative difference: 19.398"
586,590c590,592
< [4] "Component 4: Mean relative difference: 0.094592"
< [5] "Component 5: Mean relative difference: 1"
< [6] "Component 6: 1 string mismatch"
< [7] "Component 9: Mean relative difference: 0.85714"
< [8] "Component 10: 1 string mismatch"
---
> [4] "Component 4: Mean relative difference: 0.093625"
> [5] "Component 9: Mean relative difference: 0.85714"
> [6] "Component 10: 1 string mismatch"
702c704
< [2] "Component 4: Mean relative difference: 0.093944"
---
> [2] "Component 4: Mean relative difference: 0.094309"
705,706c707,708
< mu -30.298 0.000
< sigma 0.000 -60.595
---
> mu -30.326 0.000
> sigma 0.000 -60.624
716c718
< mu 1.181 0.182 6.5 8.1e-11 ***
---
> mu 1.181 0.182 6.5 7.9e-11 ***
780c782
< [1] "Component 3: Mean relative difference: 0.00015243"
---
> [1] "Component 3: Mean relative difference: 0.00065265"
901,902c903,904
< [1] "Component 3: Mean relative difference: 0.00015241"
< [2] "Component 4: Mean relative difference: 0.00030295"
---
> [1] "Component 3: Mean relative difference: 0.00065222"
> [2] "Component 4: Mean relative difference: 0.00032266"
908,909c910,911
< mu -3.0307e+01 9.2731e-06
< sigma 9.2760e-06 -6.0613e+01
---
> mu -3.0307e+01 9.2728e-06
> sigma 9.2734e-06 -6.0613e+01
1024,1025c1026,1027
< mu 1.181 0.182 6.5 8.2e-11 ***
< sigma 1.816 0.128 14.1 < 2e-16 ***
---
> mu 1.181 0.182 6.5 8e-11 ***
> sigma 1.816 0.129 14.1 <2e-16 ***
1039c1041
< sigma 1.6727
---
> sigma 1.6679
1042,1043c1044,1045
< mu -30.269121 0.056843
< sigma 0.056843 -60.566663
---
> mu -30.297542 0.028422
> sigma 0.028422 -60.538241
1061,1062c1063,1064
< mu 3.3037e-02 3.1006e-05
< sigma 3.1006e-05 1.6511e-02
---
> mu 3.3006e-02 1.5496e-05
> sigma 1.5496e-05 1.6518e-02
1066,1068c1068,1070
< [1] "Component 2: Mean relative difference: 6.806e-05"
< [2] "Component 3: Mean relative difference: 6106.9"
< [3] "Component 4: Mean relative difference: 0.0028116"
---
> [1] "Component 2: Mean relative difference: 6.8052e-05"
> [2] "Component 3: Mean relative difference: 3592"
> [3] "Component 4: Mean relative difference: 0.0024984"
1085,1087c1087,1089
< [1] "Component 2: Mean relative difference: 9.3464e-05"
< [2] "Component 3: Mean relative difference: 1.6617"
< [3] "Component 4: Mean relative difference: 0.0040625"
---
> [1] "Component 2: Mean relative difference: 9.347e-05"
> [2] "Component 3: Mean relative difference: 1.6615"
> [3] "Component 4: Mean relative difference: 0.0025016"
1108c1110
< [18,] -1.247003 2.2739093
---
> [18,] -1.247003 2.2739092
1197c1199
< Initial value of the function : -326.589781090133
---
> Initial value of the function : -326.589781090132
1227c1229
< step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6037e-10
---
> step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6043e-10
1248,1249c1250,1251
< [1] "Component 3: Mean relative difference: 0.00012587"
< [2] "Component 4: Mean relative difference: 0.0021004"
---
> [1] "Component 3: Mean relative difference: 1.9416e-05"
> [2] "Component 4: Mean relative difference: 0.0014764"
1253,1254c1255,1256
< [1] "Component 3: Mean relative difference: 7.05e-06"
< [2] "Component 4: Mean relative difference: 0.0016066"
---
> [1] "Component 3: Mean relative difference: 6.6842e-06"
> [2] "Component 4: Mean relative difference: 0.00067237"
1366c1368
< Initial value of the function : -326.589781090133
---
> Initial value of the function : -326.589781090132
1396c1398
< step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6037e-10
---
> step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6043e-10
1458,1459c1460,1461
< mu 1.181 0.182 6.51 7.7e-11 ***
< sigma 1.816 0.128 14.15 < 2e-16 ***
---
> mu 1.181 0.182 6.5 8.2e-11 ***
> sigma 1.816 0.128 14.1 < 2e-16 ***
1473c1475
< sigma 1.6679
---
> sigma 1.6715
1476,1477c1478,1479
< mu -30.354386 -0.028422
< sigma -0.028422 -60.651928
---
> mu -30.269121 0.028422
> sigma 0.028422 -60.623506
1493,1494c1495,1496
< mu 3.2944e-02 -1.5438e-05
< sigma -1.5438e-05 1.6488e-02
---
> mu 3.3037e-02 1.5489e-05
> sigma 1.5489e-05 1.6495e-02
1499,1501c1501,1503
< [2] "Component 2: Mean relative difference: 6.3918e-07"
< [3] "Component 3: Mean relative difference: 69.8"
< [4] "Component 4: Mean relative difference: 0.0028116"
---
> [2] "Component 2: Mean relative difference: 6.548e-07"
> [3] "Component 3: Mean relative difference: 41.721"
> [4] "Component 4: Mean relative difference: 0.0056127"
1518c1520
< mu 1.181 0.182 6.5 8.2e-11 ***
---
> mu 1.181 0.182 6.5 8.1e-11 ***
1524,1525c1526,1527
< [1] "Component 3: Mean relative difference: 0.00040276"
< [2] "Component 4: Mean relative difference: 0.0046729"
---
> [1] "Component 3: Mean relative difference: 0.00063978"
> [2] "Component 4: Mean relative difference: 0.00125"
1650,1651c1652,1653
< [1] "Component 3: Mean relative difference: 0.00048382"
< [2] "Component 4: Mean relative difference: 0.0015721"
---
> [1] "Component 3: Mean relative difference: 0.00041338"
> [2] "Component 4: Mean relative difference: 0.0011514"
1656c1658
< [4] "Component 4: Mean relative difference: 2.4729e-06"
---
> [4] "Component 4: Mean relative difference: 2.4728e-06"
1828,1829c1830,1831
< mu 1.181 0.182 6.5 8.1e-11 ***
< sigma 1.817 0.129 14.1 < 2e-16 ***
---
> mu 1.181 0.182 6.5 8.3e-11 ***
> sigma 1.817 0.128 14.1 < 2e-16 ***
1843c1845
< sigma 1.6679
---
> sigma 1.6681
1846,1847c1848,1849
< mu -30.297542 0.028422
< sigma 0.028422 -60.538241
---
> mu -30.269 0.000
> sigma 0.000 -60.595
1863,1864c1865,1866
< mu 3.3006e-02 1.5496e-05
< sigma 1.5496e-05 1.6518e-02
---
> mu 0.033037 0.000000
> sigma 0.000000 0.016503
1869,1871c1871,1873
< [2] "Component 2: Mean relative difference: 0.00011983"
< [3] "Component 3: Mean relative difference: 13715"
< [4] "Component 4: Mean relative difference: 0.0021868"
---
> [2] "Component 2: Mean relative difference: 0.00011984"
> [3] "Component 3: Mean relative difference: 8068.5"
> [4] "Component 4: Mean relative difference: 0.0015615"
1894,1895c1896,1897
< [1] "Component 3: Mean relative difference: 1.7799e-06"
< [2] "Component 4: Mean relative difference: 0.0025016"
---
> [1] "Component 3: Mean relative difference: 1.5236e-06"
> [2] "Component 4: Mean relative difference: 0.0037559"
1970c1972
< [72,] -1.454153 3.2909172
---
> [72,] -1.454152 3.2909172
2020,2021c2022,2023
< [1] "Component 3: Mean relative difference: 1.8393e-06"
< [2] "Component 4: Mean relative difference: 0.0013598"
---
> [1] "Component 3: Mean relative difference: 1.7481e-06"
> [2] "Component 4: Mean relative difference: 0.00059006"
2201c2203
< sigma 1.6727
---
> sigma 1.6735
2205c2207
< sigma 0.056843 -60.566663
---
> sigma 0.056843 -60.595085
2221,2222c2223,2224
< mu 3.3037e-02 3.1006e-05
< sigma 3.1006e-05 1.6511e-02
---
> mu 3.3037e-02 3.0992e-05
> sigma 3.0992e-05 1.6503e-02
2228,2230c2230,2232
< [3] "Component 2: Mean relative difference: 0.00033492"
< [4] "Component 3: Mean relative difference: 27769"
< [5] "Component 4: Mean relative difference: 0.0028116"
---
> [3] "Component 2: Mean relative difference: 0.0003349"
> [4] "Component 3: Mean relative difference: 16334"
> [5] "Component 4: Mean relative difference: 0.0028107"
2248c2250
< sigma 1.817 0.128 14.14 < 2e-16 ***
---
> sigma 1.817 0.128 14.15 < 2e-16 ***
2253,2254c2255,2256
< [1] "Component 3: Mean relative difference: 7.0334e-07"
< [2] "Component 4: Mean relative difference: 0.001875"
---
> [1] "Component 3: Mean relative difference: 1.0972e-06"
> [2] "Component 4: Mean relative difference: 0.0024992"
2379,2380c2381,2382
< [1] "Component 3: Mean relative difference: 7.2846e-07"
< [2] "Component 4: Mean relative difference: 0.001384"
---
> [1] "Component 3: Mean relative difference: 1.0721e-06"
> [2] "Component 4: Mean relative difference: 0.0010711"
2521,2522c2523,2524
< mu 1.200 0.181 6.62 3.6e-11 ***
< sigma 1.813 0.128 14.19 < 2e-16 ***
---
> mu 1.200 0.181 6.62 3.5e-11 ***
> sigma 1.813 0.128 14.18 < 2e-16 ***
2530c2532
< [4] "Component 4: Mean relative difference: 0.022005"
---
> [4] "Component 4: Mean relative difference: 0.0214"
2586c2588
< sigma NA -60.027
---
> sigma NA -59.97
2602c2604
< sigma 0 0.016659
---
> sigma 0 0.016675
2628c2630
< sigma 1.825 0.129 14.2 <2e-16 ***
---
> sigma 1.825 0.129 14.1 <2e-16 ***
2633,2634c2635,2636
< [1] "Component 3: Mean relative difference: 0.28906"
< [2] "Component 4: Mean relative difference: 0.00047348"
---
> [1] "Component 3: Mean relative difference: 0.13281"
> [2] "Component 4: Mean relative difference: 0.00047393"
2637c2639
< NA -2.8422e-08
---
> NA 2.8422e-08
2640c2642
< NA -3.6637e-08
---
> NA 2.4647e-08
2771,2772c2773,2774
< [1] "Component 3: Mean relative difference: 1"
< [2] "Component 4: Mean relative difference: 0.00013249"
---
> [1] "Component 3: Mean relative difference: 0.99998"
> [2] "Component 4: Mean relative difference: 0.00081525"
2775c2777
< NA -2.8422e-08
---
> NA 2.8422e-08
2778c2780
< NA 5.5422e-13
---
> NA 5.4712e-13
2782c2784
< sigma NA -60.027
---
> sigma NA -59.97
2789,2790c2791,2792
< [1] "Component 3: Mean relative difference: 1"
< [2] "Component 4: Mean relative difference: 0.00060569"
---
> [1] "Component 3: Mean relative difference: 0.99998"
> [2] "Component 4: Mean relative difference: 0.00034115"
2793c2795
< NA -3.6637e-08
---
> NA 2.4647e-08
2796c2798
< NA 5.5395e-13
---
> NA 5.4839e-13
2800c2802
< sigma NA -60.055
---
> sigma NA -59.998
2999,3000c3001,3002
< [1] "Component 2: Mean relative difference: 7.6903e-08"
< [2] "Component 3: Mean relative difference: 295.63"
---
> [1] "Component 2: Mean relative difference: 7.6899e-08"
> [2] "Component 3: Mean relative difference: 298.54"
3002c3004
< [4] "Component 4: Mean relative difference: 0.067365"
---
> [4] "Component 4: Mean relative difference: 0.066481"
3005c3007
< NA -2.8422e-08
---
> NA 2.8422e-08
3008c3010
< NA -8.4308e-06
---
> NA -8.4566e-06
3012c3014
< sigma NA -60.027
---
> sigma NA -59.97
3160c3162
< [1] "Component 3: Mean relative difference: 0.0018656"
---
> [1] "Component 3: Mean relative difference: 0.0011859"
3215c3217
< mu -29.9849 -5.9401
---
> mu -30.0133 -5.9401
3242,3243c3244,3245
< [1] "Component 3: Mean relative difference: 9.6699e-08"
< [2] "Component 4: Mean relative difference: 0.0011158"
---
> [1] "Component 3: Mean relative difference: 8.7205e-08"
> [2] "Component 4: Mean relative difference: 0.0011154"
3372c3374
< BFGS maximisation, 29 iterations
---
> BFGS maximisation, 27 iterations
3384,3385c3386
< [1] "Component 3: Mean relative difference: 9.379e-08"
< [2] "Component 4: Mean relative difference: 0.00041067"
---
> [1] "Component 4: Mean relative difference: 0.00020974"
3389c3390
< [1] "Component 3: Mean relative difference: 1.6539e-08"
---
> [1] TRUE
3403c3404
< [11,] 0.7346780 0.437486
---
> [11,] 0.7346779 0.437486
3418c3419
< [26,] -1.0123314 1.322948
---
> [26,] -1.0123313 1.322948
3425c3426
< [33,] 0.5372428 -0.020926
---
> [33,] 0.5372428 -0.020927
3462c3463
< [70,] 1.2304341 2.215877
---
> [70,] 1.2304341 2.215876
3492c3493
< [100,] -0.6160445 0.144973
---
> [100,] -0.6160444 0.144973
3572,3573c3573,3574
< mu -30.0417 -5.9686
< sigma -5.9686 -60.0551
---
> mu -30.0133 -5.9401
> sigma -5.9401 -60.0551
3595,3596c3596,3597
< [2] "Component 3: Mean relative difference: 0.00081259"
< [3] "Component 4: Mean relative difference: 0.0013947"
---
> [2] "Component 3: Mean relative difference: 0.0008126"
> [3] "Component 4: Mean relative difference: 0.00047348"
3604c3605
< [1] TRUE
---
> [1] "Component 4: Mean relative difference: 0.0020353"
3766c3767
< [1] "Component 4: Mean relative difference: 0.00099652"
---
> [1] "Component 4: Mean relative difference: 0.00037194"
3950c3951
< sigma -5.9401 -59.9982
---
> sigma -5.9401 -60.0267
3967c3968
< sigma 0 0.016667
---
> sigma 0 0.016659
3971,3973c3972,3974
< [1] "Component 2: Mean relative difference: 8.9399e-06"
< [2] "Component 3: Mean relative difference: 0.00019839"
< [3] "Component 4: Mean relative difference: 0.00047348"
---
> [1] "Component 2: Mean relative difference: 8.9402e-06"
> [2] "Component 3: Mean relative difference: 0.00019841"
> [3] "Component 4: Mean relative difference: 0.00094697"
3977c3978
< [1] "Component 4: Mean relative difference: 0.00094757"
---
> [1] "Component 4: Mean relative difference: 0.00063151"
4103c4104
< [1] "Component 4: Mean relative difference: 0.00056838"
---
> [1] "Component 4: Mean relative difference: 0.00039275"
4255,4256c4256,4257
< mu 0.820 0.174 4.7 2.5e-06 ***
< sigma 1.680 0.107 15.7 < 2e-16 ***
---
> mu 0.820 0.174 4.71 2.5e-06 ***
> sigma 1.680 0.107 15.69 < 2e-16 ***
4274c4275
< sigma 3.6086
---
> sigma 3.6106
4277,4278c4278,4279
< mu -35.413 -15.206
< sigma -15.206 -93.621
---
> mu -35.442 -15.234
> sigma -15.234 -93.706
4294,4295c4295,4296
< mu 0.0303547 -0.0049301
< sigma -0.0049301 0.0114821
---
> mu 0.0303350 -0.0049316
> sigma -0.0049316 0.0114734
4309,4310c4310,4311
< mu 0.820 0.174 4.7 2.6e-06 ***
< sigma 1.680 0.107 15.7 < 2e-16 ***
---
> mu 0.820 0.174 4.71 2.5e-06 ***
> sigma 1.680 0.107 15.69 < 2e-16 ***
4319,4321c4320,4322
< [1] "Component 3: Mean relative difference: 2.0253e-08"
< [2] "Component 4: Mean relative difference: 0.00066079"
< [3] "Component 11: Component 2: Mean relative difference: 7.9943e-07"
---
> [1] "Component 3: Mean relative difference: 1.4957e-08"
> [2] "Component 4: Mean relative difference: 0.00071225"
> [3] "Component 11: Component 2: Mean relative difference: 7.1367e-07"
4433,4436c4434,4437
< [1] "Component 2: Mean relative difference: 2.6426e-08"
< [2] "Component 3: Mean relative difference: 1.2831e-07"
< [3] "Component 4: Mean relative difference: 0.00058164"
< [4] "Component 11: Component 2: Mean relative difference: 4.753e-06"
---
> [1] "Component 2: Mean relative difference: 2.7021e-08"
> [2] "Component 3: Mean relative difference: 1.3164e-07"
> [3] "Component 4: Mean relative difference: 0.00048736"
> [4] "Component 11: Component 2: Mean relative difference: 4.8053e-06"
4573,4574c4574,4575
< mu 0.820 0.174 4.7 2.6e-06 ***
< sigma 1.680 0.107 15.7 < 2e-16 ***
---
> mu 0.820 0.174 4.71 2.5e-06 ***
> sigma 1.680 0.107 15.68 < 2e-16 ***
4592c4593
< sigma 3.6128
---
> sigma 3.61
4595,4596c4596,4597
< mu -35.385 -15.206
< sigma -15.206 -93.678
---
> mu -35.442 -15.234
> sigma -15.234 -93.678
4612,4613c4613,4614
< mu 0.0303795 -0.0049311
< sigma -0.0049311 0.0114753
---
> mu 0.0303357 -0.0049332
> sigma -0.0049332 0.0114771
4618,4620c4619,4621
< [2] "Component 2: Mean relative difference: 5.2847e-06"
< [3] "Component 3: Mean relative difference: 2.6951e-05"
< [4] "Component 4: Mean relative difference: 0.00066079"
---
> [2] "Component 2: Mean relative difference: 5.2841e-06"
> [3] "Component 3: Mean relative difference: 2.6948e-05"
> [4] "Component 4: Mean relative difference: 0.00030331"
4636c4637
< sigma 1.680 0.107 15.68 < 2e-16 ***
---
> sigma 1.680 0.107 15.69 < 2e-16 ***
4645c4646
< [1] "Component 4: Mean relative difference: 0.0017279"
---
> [1] "Component 4: Mean relative difference: 0.00091575"
4757c4758
< [1] "Component 4: Mean relative difference: 0.00048537"
---
> [1] "Component 4: Mean relative difference: 0.00032168"
4830c4831
< [4] "Component 4: Mean relative difference: 0.020143"
---
> [4] "Component 4: Mean relative difference: 0.019765"
4853c4854
< mu 0.812 0.175 4.64 3.4e-06 ***
---
> mu 0.812 0.175 4.65 3.4e-06 ***
4866c4867
< [4] "Component 4: Mean relative difference: 0.026522"
---
> [4] "Component 4: Mean relative difference: 0.026157"
4890c4891
< sigma 1.680 0.107 15.69 < 2e-16 ***
---
> sigma 1.680 0.107 15.68 < 2e-16 ***
4910c4911
< sigma 3.6106
---
> sigma 3.6139
4913,4914c4914,4915
< mu -35.442 -15.234
< sigma -15.234 -93.706
---
> mu -35.442 -15.262
> sigma -15.262 -93.706
4929,4930c4930,4931
< mu 0.0303350 -0.0049316
< sigma -0.0049316 0.0114734
---
> mu 0.0303435 -0.0049422
> sigma -0.0049422 0.0114766
4944c4945
< sigma 1.680 0.107 15.68 < 2e-16 ***
---
> sigma 1.680 0.107 15.69 < 2e-16 ***
4955c4956
< [1] "Component 4: Mean relative difference: 0.00060661"
---
> [1] "Component 4: Mean relative difference: 0.0018622"
5091c5092
< [4] "Component 4: Mean relative difference: 0.024796"
---
> [4] "Component 4: Mean relative difference: 0.025143"
5101c5102
< [4] "Component 4: Mean relative difference: 0.025161"
---
> [4] "Component 4: Mean relative difference: 0.024796"
5112c5113
< [1] "Component 11: Component 2: Mean relative difference: 4.9945e-08"
---
> [1] TRUE
5226c5227
< [4] "Component 4: Mean relative difference: 0.024595"
---
> [4] "Component 4: Mean relative difference: 0.024948"
5242c5243
< [2] "Component 11: Component 2: Mean relative difference: 5.8452e-08"
---
> [2] "Component 11: Component 2: Mean relative difference: 2.305e-08"
5252c5253
< [4] "Component 4: Mean relative difference: 0.024595"
---
> [4] "Component 4: Mean relative difference: 0.024948"
5304c5305
< sigma 3.6106
---
> sigma 3.6148
5307,5308c5308,5309
< mu -35.442 -15.234
< sigma -15.234 -93.706
---
> mu -35.413 -15.234
> sigma -15.234 -93.763
5323,5324c5324,5325
< mu 0.0303350 -0.0049316
< sigma -0.0049316 0.0114734
---
> mu 0.0303598 -0.0049327
> sigma -0.0049327 0.0114666
5329a5331
> [3] "Component 4: Mean relative difference: 0.00089"
5466c5468
< [4] "Component 4: Mean relative difference: 0.027926"
---
> [4] "Component 4: Mean relative difference: 0.027743"
5509c5511
< [4] "Component 4: Mean relative difference: 0.027325"
---
> [4] "Component 4: Mean relative difference: 0.02715"
5539c5541
< BFGS maximisation, 33 iterations
---
> BFGS maximisation, 31 iterations
5546c5548
< BFGS maximisation, 33 iterations
---
> BFGS maximisation, 31 iterations
5553c5555
< sigma 1.680 0.107 15.69 < 2e-16 ***
---
> sigma 1.680 0.107 15.68 < 2e-16 ***
5561c5563
< 10 outer iterations, barrier value 2.0699e-10
---
> 10 outer iterations, barrier value 2.07e-10
5573c5575
< sigma 3.6098
---
> sigma 3.6092
5577c5579
< sigma -15.206 -93.678
---
> sigma -15.206 -93.650
5584c5586
< 33
---
> 31
5593,5594c5595,5596
< mu 0.0303533 -0.0049269
< sigma -0.0049269 0.0114746
---
> mu 0.0303540 -0.0049285
> sigma -0.0049285 0.0114783
5598c5600
< [1] "Component 4: Mean relative difference: 0.00071276"
---
> [1] "Component 4: Mean relative difference: 0.0012475"
5610,5611c5612,5613
< mu 0.820 0.174 4.71 2.5e-06 ***
< sigma 1.680 0.107 15.68 < 2e-16 ***
---
> mu 0.820 0.174 4.7 2.5e-06 ***
> sigma 1.680 0.107 15.7 < 2e-16 ***
5622,5623c5624
< [1] "Component 4: Mean relative difference: 0.0003034"
< [2] "Component 9: Mean relative difference: 0.060606"
---
> [1] "Component 4: Mean relative difference: 0.00068729"
5737c5738
< BFGS maximisation, 32 iterations
---
> BFGS maximisation, 30 iterations
5758,5759c5759,5760
< [4] "Component 4: Mean relative difference: 0.027257"
< [5] "Component 9: Mean relative difference: 0.030303"
---
> [4] "Component 4: Mean relative difference: 0.027441"
> [5] "Component 9: Mean relative difference: 0.032258"
5944c5945
< [3] "Component 4: Mean relative difference: 0.00089111"
---
> [3] "Component 4: Mean relative difference: 0.0012475"
5968c5969
< [1] TRUE
---
> [1] "Component 4: Mean relative difference: 0.00091638"
6263c6264
< [4] "Component 4: Mean relative difference: 0.0075242"
---
> [4] "Component 4: Mean relative difference: 0.007345"
6277c6278
< problem in imposing equality constraints: the constraints are not satisfied (barrier value = 0.254780368286165). Try setting 'SUMTTol' to 0
---
> problem in imposing equality constraints: the constraints are not satisfied (barrier value = 0.254780368286163). Try setting 'SUMTTol' to 0
6302c6303
< [4] "Component 4: Mean relative difference: 0.76341"
---
> [4] "Component 4: Mean relative difference: 0.76467"
6316c6317
< as.Date, as.Date.numeric
---
> as.Date
6547c6548
< sigma 0.0000 1.6503
---
> sigma 0.0000 1.6488
6550,6551c6551,6552
< mu 3.2996e+00 -7.7766e-11
< sigma -7.7766e-11 1.6498e+00
---
> mu 3.2996e+00 -8.4565e-11
> sigma -8.4565e-11 1.6498e+00
6562c6563
< mu 3.3037 0.0000
---
> mu 3.3006 0.0000
6570,6571c6571,6572
< mu 3.2975059 -0.0015459
< sigma -0.0015459 1.6495259
---
> mu 3.2975059 -0.0015467
> sigma -0.0015467 1.6502996
6578,6579c6579,6580
< mu 3.2975059 0.0015459
< sigma 0.0015459 1.6495259
---
> mu 3.2975 0.0000
> sigma 0.0000 1.6488
6587c6588
< sigma 0 1.6651
---
> sigma 0 1.6667
6603c6604
< sigma 0 1.6651
---
> sigma 0 1.6667
6619c6620
< sigma 0 1.6659
---
> sigma 0 1.6667
6626,6627c6627,6628
< mu 3.03795 -0.49311
< sigma -0.49311 1.14753
---
> mu 3.03533 -0.49269
> sigma -0.49269 1.14746
6634,6635c6635,6636
< mu 3.03357 -0.49332
< sigma -0.49332 1.14771
---
> mu 3.03428 -0.49406
> sigma -0.49406 1.14729
6638,6639c6639,6640
< mu 3.03364 -0.49348
< sigma -0.49348 1.14809
---
> mu 3.03350 -0.49316
> sigma -0.49316 1.14734
6646,6647c6647,6648
< mu 3.03350 -0.49316
< sigma -0.49316 1.14734
---
> mu 3.03598 -0.49327
> sigma -0.49327 1.14666
6654,6655c6655,6656
< mu 3.03540 -0.49285
< sigma -0.49285 1.14783
---
> mu 3.03618 -0.49375
> sigma -0.49375 1.14778
6662,6663c6663,6664
< mu 3.03540 -0.49285
< sigma -0.49285 1.14783
---
> mu 3.03612 -0.49359
> sigma -0.49359 1.14741
6680,6682c6681,6683
< mu 0.03301594 0.00099872
< sigma 0.00099872 0.01517864
< [1] "Mean relative difference: 0.06638"
---
> mu 0.03301594 0.00099779
> sigma 0.00099779 0.01515020
> [1] "Mean relative difference: 0.066642"
6700,6702c6701,6703
< mu 0.03307792 0.00099874
< sigma 0.00099874 0.01515017
< [1] "Mean relative difference: 0.067213"
---
> mu 0.03301589 0.00099781
> sigma 0.00099781 0.01515017
> [1] "Mean relative difference: 0.066642"
6710,6712c6711,6713
< mu 0.03294097 0.00097094
< sigma 0.00097094 0.01515593
< [1] "Mean relative difference: 0.066872"
---
> mu 0.03294097 0.00097139
> sigma 0.00097139 0.01517015
> [1] "Mean relative difference: 0.066741"
6720,6722c6721,6723
< mu 0.0329532 0.0010094
< sigma 0.0010094 0.0151624
< [1] "Mean relative difference: 0.066672"
---
> mu 0.03295130 0.00097923
> sigma 0.00097923 0.01514723
> [1] "Mean relative difference: 0.066374"
6751,6752c6752,6753
< sigma 0 0.015522
< [1] "Mean relative difference: 0.072738"
---
> sigma 0 0.015552
> [1] "Mean relative difference: 0.071723"
6771,6772c6772,6773
< sigma 0 0.015538
< [1] "Mean relative difference: 0.072173"
---
> sigma 0 0.015553
> [1] "Mean relative difference: 0.071666"
6780,6782c6781,6783
< mu 0.0355274 -0.0038827
< sigma -0.0038827 0.0117852
< [1] "Mean relative difference: 0.13716"
---
> mu 0.0354661 -0.0038744
> sigma -0.0038744 0.0117841
> [1] "Mean relative difference: 0.13686"
6790,6792c6791,6793
< mu 0.0354210 -0.0038887
< sigma -0.0038887 0.0117885
< [1] "Mean relative difference: 0.13614"
---
> mu 0.0354355 -0.0039057
> sigma -0.0039057 0.0117790
> [1] "Mean relative difference: 0.13573"
6795,6797c6796,6798
< mu 0.0354234 -0.0038924
< sigma -0.0038924 0.0117967
< [1] "Mean relative difference: 0.13613"
---
> mu 0.0354212 -0.0038865
> sigma -0.0038865 0.0117814
> [1] "Mean relative difference: 0.13614"
6805,6807c6806,6808
< mu 0.0354347 -0.0038904
< sigma -0.0038904 0.0117879
< [1] "Mean relative difference: 0.1363"
---
> mu 0.0354936 -0.0038929
> sigma -0.0038929 0.0117736
> [1] "Mean relative difference: 0.13661"
6815,6817c6816,6818
< mu 0.0354679 -0.0038779
< sigma -0.0038779 0.0117920
< [1] "Mean relative difference: 0.13685"
---
> mu 0.0354834 -0.0038978
> sigma -0.0038978 0.0117901
> [1] "Mean relative difference: 0.13643"
6825,6827c6826,6828
< mu 0.0354631 -0.0038765
< sigma -0.0038765 0.0117897
< [1] "Mean relative difference: 0.13679"
---
> mu 0.0354776 -0.0038935
> sigma -0.0038935 0.0117801
> [1] "Mean relative difference: 0.13638"
Running ‘methods.R’ [0s/0s]
Comparing ‘methods.Rout’ to ‘methods.Rout.save’ ...16d15
< >
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/maxLik.Rcheck/00check.log’
for details.