- using R version 2.10.0 Under development (unstable) (2009-07-01 r48886)
- using session charset: UTF-8
- checking for file 'kernlab/DESCRIPTION' ... OK
- this is package 'kernlab' version '0.9-8'
- checking package name space information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking for executable files ... OK
- checking whether package 'kernlab' can be installed ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the name space can be loaded with stated dependencies ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
kernelMult,ANY-ANY: no visible binding for global variable ‘Z’
- checking Rd files ... OK
- checking Rd files against version 2 parser ... WARNING
Warning in parse_Rd("./man/csi.Rd", encoding = "unknown") :
./man/csi.Rd:100: unknown macro '\item'
*** error on file ./man/csi.Rd
Error : ./man/csi.Rd:100: Unrecognized macro \item
Warning in parse_Rd("./man/inchol.Rd", encoding = "unknown") :
./man/inchol.Rd:76: unknown macro '\item'
*** error on file ./man/inchol.Rd
Error : ./man/inchol.Rd:76: Unrecognized macro \item
Warning in parse_Rd("./man/ipop-class.Rd", encoding = "unknown") :
./man/ipop-class.Rd:27: unknown macro '\item'
Warning in parse_Rd("./man/ipop-class.Rd", encoding = "unknown") :
./man/ipop-class.Rd:28: unknown macro '\item'
Warning in parse_Rd("./man/ipop-class.Rd", encoding = "unknown") :
./man/ipop-class.Rd:29: unknown macro '\item'
*** error on file ./man/ipop-class.Rd
Error : ./man/ipop-class.Rd:27: Unrecognized macro \item
Warning: ./man/ksvm.Rd:240: Unnecessary braces at ‘{kbb-svc}’
Warning in parse_Rd("./man/lssvm.Rd", encoding = "unknown") :
./man/lssvm.Rd:191: unknown macro '\item'
*** error on file ./man/lssvm.Rd
Error : ./man/lssvm.Rd:191: Unrecognized macro \item
Warning in parse_Rd("./man/rvm.Rd", encoding = "unknown") :
./man/rvm.Rd:165: unknown macro '\item'
*** error on file ./man/rvm.Rd
Error : ./man/rvm.Rd:165: Unrecognized macro \item
problems found in ‘csi.Rd’, ‘inchol.Rd’, ‘ipop-class.Rd’, ‘lssvm.Rd’, ‘rvm.Rd’
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... WARNING
S4 class codoc mismatches from documentation object 'kmmd-class':
Slots for class 'kmmd'
Code: Asymbound AsympH0 H0 Radbound kernelf mmdstats xmatrix
Docs: Asymbound AsympH0 H0 Radbound kernelf kpar mmdstats
S4 class codoc mismatches from documentation object 'kqr-class':
Slots for class 'kqr'
Code: alpha b coef cross error fitted kcall kernelf kpar lev n.action
nclass param scaling terms type xmatrix ymatrix
Inherited: alpha type kernelf kpar xmatrix ymatrix fitted lev nclass
error cross n.action terms kcall
Docs: alpha b cross error fitted kcall kernelf kpar n.action param
scaling terms xmatrix ymatrix
S4 class codoc mismatches from documentation object 'lssvm-class':
Slots for class 'lssvm'
Code: alpha alphaindex b coef cross error fitted kcall kernelf kpar
lev n.action nSV nclass param scaling terms type xmatrix
ymatrix
Inherited: alpha type kernelf kpar xmatrix ymatrix fitted lev nclass
error cross n.action terms kcall
Docs: alpha alphaindex cross error fitted kcall kernelf kpar lev
n.action nclass nvar param scaling terms tol type xmatrix
ymatrix
S4 class codoc mismatches from documentation object 'rvm-class':
Slots for class 'rvm'
Code: RVindex alpha coef cross error fitted kcall kernelf kpar lev
mlike n.action nRV nclass nvar terms tol type xmatrix ymatrix
Inherited: alpha type kernelf kpar xmatrix ymatrix fitted lev nclass
error cross n.action terms kcall
Docs: RVindex alpha cross error fitted kcall kernelf kpar lev mlike
n.action nRV nclass nvar terms tol type xmatrix ymatrix
S4 class codoc mismatches from documentation object 'specc-class':
Slots for class 'specc'
Code: .Data centers kernelf size withinss
Docs: centers kernelf size withinss
- checking Rd \usage sections ... OK
- checking data for non-ASCII characters ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $BLAS_LIBS ... OK
- checking examples ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking PDF version of manual ... OK