• using R version 2.10.0 Under development (unstable) (2009-07-01 r48886)
  • using session charset: UTF-8
  • checking for file 'kernlab/DESCRIPTION' ... OK
  • this is package 'kernlab' version '0.9-8'
  • checking package name space information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking for executable files ... OK
  • checking whether package 'kernlab' can be installed ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the name space can be loaded with stated dependencies ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    kernelMult,ANY-ANY: no visible binding for global variable ‘Z’
  • checking Rd files ... OK
  • checking Rd files against version 2 parser ... WARNING
    Warning in parse_Rd("./man/csi.Rd", encoding = "unknown") :
    ./man/csi.Rd:100: unknown macro '\item'
    *** error on file ./man/csi.Rd
    Error : ./man/csi.Rd:100: Unrecognized macro \item

    Warning in parse_Rd("./man/inchol.Rd", encoding = "unknown") :
    ./man/inchol.Rd:76: unknown macro '\item'
    *** error on file ./man/inchol.Rd
    Error : ./man/inchol.Rd:76: Unrecognized macro \item

    Warning in parse_Rd("./man/ipop-class.Rd", encoding = "unknown") :
    ./man/ipop-class.Rd:27: unknown macro '\item'
    Warning in parse_Rd("./man/ipop-class.Rd", encoding = "unknown") :
    ./man/ipop-class.Rd:28: unknown macro '\item'
    Warning in parse_Rd("./man/ipop-class.Rd", encoding = "unknown") :
    ./man/ipop-class.Rd:29: unknown macro '\item'
    *** error on file ./man/ipop-class.Rd
    Error : ./man/ipop-class.Rd:27: Unrecognized macro \item

    Warning: ./man/ksvm.Rd:240: Unnecessary braces at ‘{kbb-svc}’
    Warning in parse_Rd("./man/lssvm.Rd", encoding = "unknown") :
    ./man/lssvm.Rd:191: unknown macro '\item'
    *** error on file ./man/lssvm.Rd
    Error : ./man/lssvm.Rd:191: Unrecognized macro \item

    Warning in parse_Rd("./man/rvm.Rd", encoding = "unknown") :
    ./man/rvm.Rd:165: unknown macro '\item'
    *** error on file ./man/rvm.Rd
    Error : ./man/rvm.Rd:165: Unrecognized macro \item

    problems found in ‘csi.Rd’, ‘inchol.Rd’, ‘ipop-class.Rd’, ‘lssvm.Rd’, ‘rvm.Rd’
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... WARNING
    S4 class codoc mismatches from documentation object 'kmmd-class':
    Slots for class 'kmmd'
    Code: Asymbound AsympH0 H0 Radbound kernelf mmdstats xmatrix
    Docs: Asymbound AsympH0 H0 Radbound kernelf kpar mmdstats

    S4 class codoc mismatches from documentation object 'kqr-class':
    Slots for class 'kqr'
    Code: alpha b coef cross error fitted kcall kernelf kpar lev n.action
    nclass param scaling terms type xmatrix ymatrix
    Inherited: alpha type kernelf kpar xmatrix ymatrix fitted lev nclass
    error cross n.action terms kcall
    Docs: alpha b cross error fitted kcall kernelf kpar n.action param
    scaling terms xmatrix ymatrix

    S4 class codoc mismatches from documentation object 'lssvm-class':
    Slots for class 'lssvm'
    Code: alpha alphaindex b coef cross error fitted kcall kernelf kpar
    lev n.action nSV nclass param scaling terms type xmatrix
    ymatrix
    Inherited: alpha type kernelf kpar xmatrix ymatrix fitted lev nclass
    error cross n.action terms kcall
    Docs: alpha alphaindex cross error fitted kcall kernelf kpar lev
    n.action nclass nvar param scaling terms tol type xmatrix
    ymatrix

    S4 class codoc mismatches from documentation object 'rvm-class':
    Slots for class 'rvm'
    Code: RVindex alpha coef cross error fitted kcall kernelf kpar lev
    mlike n.action nRV nclass nvar terms tol type xmatrix ymatrix
    Inherited: alpha type kernelf kpar xmatrix ymatrix fitted lev nclass
    error cross n.action terms kcall
    Docs: RVindex alpha cross error fitted kcall kernelf kpar lev mlike
    n.action nRV nclass nvar terms tol type xmatrix ymatrix

    S4 class codoc mismatches from documentation object 'specc-class':
    Slots for class 'specc'
    Code: .Data centers kernelf size withinss
    Docs: centers kernelf size withinss
  • checking Rd \usage sections ... OK
  • checking data for non-ASCII characters ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable compilation flags in Makevars ... OK
  • checking for portable use of $BLAS_LIBS ... OK
  • checking examples ... OK
  • checking package vignettes in 'inst/doc' ... OK
  • checking PDF version of manual ... OK