- using R Under development (unstable) (2012-02-23 r58468)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘intamapInteractive/DESCRIPTION’ ... OK
- this is package ‘intamapInteractive’ version ‘1.1-1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘intamapInteractive’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
calculateDensity: warning in filled.contour(density_L, color =
terrain.colors): partial argument match of 'color' to 'color.palette'
ssaMap: warning in factor(overselect[i - 1], level =
levels(netPts@data[, i])): partial argument match of 'level' to
'levels'
ssaMap: warning in factor(round(lres), level = levels(netPts@data[,
i])): partial argument match of 'level' to 'levels'
ssaOptim: warning in factor(round(lres), level = levels(predGrid@data[,
vname])): partial argument match of 'level' to 'levels'
Found .Internal call in the following function:
‘zip.file.extract.dir’
with calls to .Internal functions
‘int.unzip’
Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [7s/8s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [47s/48s] OK
Running ‘anisotropyChoice.R’ [6s/6s]
Comparing ‘anisotropyChoice.Rout’ to ‘anisotropyChoice.Rout.save’ ...12,13c12,13
< Loaded GDAL runtime: GDAL 1.7.3, released 2010/11/10
< Path to GDAL shared files: /usr/share/gdal/1.7
---
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
15c15
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
17,18c17,18
< This is mgcv 1.7-13. For overview type 'help("mgcv-package")'.
< deldir 0.0-16
---
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
23c23
< spatstat 1.25-3
---
> spatstat 1.24-1
39c39
< as.Date, as.Date.numeric
---
> as.Date
62,63c62
< Warning message:
< replacing previous import 'show' when loading 'rJava'
---
> There were 12 warnings (use warnings() to see them)
Running ‘biasCorr.R’ [6s/6s]
Comparing ‘biasCorr.Rout’ to ‘biasCorr.Rout.save’ ...12,13c12,13
< Loaded GDAL runtime: GDAL 1.7.3, released 2010/11/10
< Path to GDAL shared files: /usr/share/gdal/1.7
---
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
15c15
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
17,18c17,18
< This is mgcv 1.7-13. For overview type 'help("mgcv-package")'.
< deldir 0.0-16
---
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
23c23
< spatstat 1.25-3
---
> spatstat 1.24-1
39c39
< as.Date, as.Date.numeric
---
> as.Date
62,63c62
< Warning message:
< replacing previous import 'show' when loading 'rJava'
---
> There were 12 warnings (use warnings() to see them)
120,122c119,121
< x3 8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996583 0.06706801
< x4 5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430784 0.04975117
< x5 4 0.099305510 0.08948375 1.10976021 0.38266270 0.081768042 0.07854582
---
> x3 8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996582 0.06706801
> x4 5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430783 0.04975117
> x5 4 0.099305510 0.08948375 1.10976021 0.38266270 0.081768041 0.07854582
128c127
< x2 -5.8387562 0.02810256
---
> x2 -5.8387563 0.02810256
Running ‘findLocalBias.R’ [5s/5s]
Comparing ‘findLocalBias.Rout’ to ‘findLocalBias.Rout.save’ ...13,14c13,14
< Loaded GDAL runtime: GDAL 1.7.3, released 2010/11/10
< Path to GDAL shared files: /usr/share/gdal/1.7
---
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
16c16
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
18,19c18,19
< This is mgcv 1.7-13. For overview type 'help("mgcv-package")'.
< deldir 0.0-16
---
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
24c24
< spatstat 1.25-3
---
> spatstat 1.24-1
40c40
< as.Date, as.Date.numeric
---
> as.Date
63,64c63
< Warning message:
< replacing previous import 'show' when loading 'rJava'
---
> There were 12 warnings (use warnings() to see them)
119c118
< NA's :2
---
> NA's : 2.000
Running ‘findRegionalBias.R’ [6s/6s]
Comparing ‘findRegionalBias.Rout’ to ‘findRegionalBias.Rout.save’ ...13,14c13,14
< Loaded GDAL runtime: GDAL 1.7.3, released 2010/11/10
< Path to GDAL shared files: /usr/share/gdal/1.7
---
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
16c16
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
18,19c18,19
< This is mgcv 1.7-13. For overview type 'help("mgcv-package")'.
< deldir 0.0-16
---
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
24c24
< spatstat 1.25-3
---
> spatstat 1.24-1
40c40
< as.Date, as.Date.numeric
---
> as.Date
63,64c63
< Warning message:
< replacing previous import 'show' when loading 'rJava'
---
> There were 12 warnings (use warnings() to see them)
109,111c108,110
< x3 8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996583 0.06706801
< x4 5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430784 0.04975117
< x5 4 0.099305510 0.08948375 1.10976021 0.38266270 0.081768042 0.07854582
---
> x3 8 -0.029488587 0.08028035 -0.36732013 0.74860681 -0.021996582 0.06706801
> x4 5 -0.012276606 0.05762046 -0.21305984 0.85102512 -0.006430783 0.04975117
> x5 4 0.099305510 0.08948375 1.10976021 0.38266270 0.081768041 0.07854582
117c116
< x2 -5.8387562 0.02810256
---
> x2 -5.8387563 0.02810256
Running ‘optimizingTest.R’ [24s/25s]
Comparing ‘optimizingTest.Rout’ to ‘optimizingTest.Rout.save’ ...15,16c15,16
< Loaded GDAL runtime: GDAL 1.7.3, released 2010/11/10
< Path to GDAL shared files: /usr/share/gdal/1.7
---
> Loaded GDAL runtime: GDAL 1.7.2, released 2010/04/23
> Path to GDAL shared files: C:/Program Files/R/R-2.13.1/library/rgdal/gdal
18c18
< Path to PROJ.4 shared files: (autodetected)
---
> Path to PROJ.4 shared files: C:/Program Files/R/R-2.13.1/library/rgdal/proj
20,21c20,21
< This is mgcv 1.7-13. For overview type 'help("mgcv-package")'.
< deldir 0.0-16
---
> This is mgcv 1.7-9. For overview type 'help("mgcv-package")'.
> deldir 0.0-15
26c26
< spatstat 1.25-3
---
> spatstat 1.24-1
42c42
< as.Date, as.Date.numeric
---
> as.Date
65,66c65
< Warning message:
< replacing previous import 'show' when loading 'rJava'
---
> There were 12 warnings (use warnings() to see them)
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/intamapInteractive.Rcheck/00check.log’
for details.