• using R Under development (unstable) (2012-02-23 r58468)
  • using platform: i686-pc-linux-gnu (32-bit)
  • using session charset: UTF-8
  • checking for file ‘gdata/DESCRIPTION’ ... OK
  • this is package ‘gdata’ version ‘2.8.2’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package ‘gdata’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    ConvertMedUnits: no visible binding for global variable ‘MedUnits’
    env : get.environment.size: warning in ls(pos, all = TRUE): partial
    argument match of 'all' to 'all.names'
    env : get.environment.nobjects: warning in ls(pos, all = TRUE): partial
    argument match of 'all' to 'all.names'
    Found .Internal call in the following function:
    ‘object.size’
    with calls to .Internal functions
    ‘object.size’

    Packages should not call .Internal(): it is not part of the API, for
    use only by R itself and subject to change without notice.
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... NOTE
    S3 methods shown with full name in documentation object 'aggregate.table':
    ‘aggregate.table’

    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... NOTE
    The following files should probably not be installed:
    ‘Rnews.sty’, ‘gregmisc.tex’

    Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
    or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
  • checking examples ... [4s/4s] OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... [4s/4s] OK
    Running ‘test.read.xls.R’ [3s/3s]
    Comparing ‘test.read.xls.Rout’ to ‘test.read.xls.Rout.save’ ...10,13d9
    < The following object(s) are masked from 'package:stats':
    <
    < nobs
    <
    528c524
    < X D E. F G Factor
    ---
    > X D E F G Factor
    538,542c534,538
    < 2 3 2003-03-03 3:03 0.3564875 -0.84147098 C
    < 3 4 2004-04-04 4:04 0.4116363 0.70807342
    < 4 5 2005-05-05 5:05 0.4602234 0.50136797 A
    < 5 6 2006-06-06 6:06 NA 0.25136984 B
    < 6 7 2007-07-07 7:07 0.5445436 0.06318679 B
    ---
    > 2 3 2003-03-03 3:03 0.3564875 -0.8414710 C
    > 3 4 2004-04-04 4:04 0.4116363 0.7080734
    > 4 5 2005-05-05 5:05 0.4602234 0.5013680 A
    > 5 6 2006-06-06 6:06 NA 0.2513698 B
    > 6 7 2007-07-07 7:07 0.5445436 0.0631868 B
    544,545c540,541
    < 8 9 2009-09-09 9:09 0.6174545 0.00000000 A
    < 9 10 2010-10-10 10:10 0.6508541 0.00000000 A
    ---
    > 8 9 2009-09-09 9:09 0.6174545 0.0000000 A
    > 9 10 2010-10-10 10:10 0.6508541 0.0000000 A
    551,555c547,551
    < 2 3 2003-03-03 3:03 0.3564875 -0.84147098 C
    < 3 4 2004-04-04 4:04 0.4116363 0.70807342
    < 4 5 2005-05-05 5:05 0.4602234 0.50136797 A
    < 5 6 2006-06-06 6:06 NA 0.25136984 B
    < 6 7 2007-07-07 7:07 0.5445436 0.06318679 B
    ---
    > 2 3 2003-03-03 3:03 0.3564875 -0.8414710 C
    > 3 4 2004-04-04 4:04 0.4116363 0.7080734
    > 4 5 2005-05-05 5:05 0.4602234 0.5013680 A
    > 5 6 2006-06-06 6:06 NA 0.2513698 B
    > 6 7 2007-07-07 7:07 0.5445436 0.0631868 B
    557,558c553,554
    < 8 9 2009-09-09 9:09 0.6174545 0.00000000 A
    < 9 10 2010-10-10 10:10 0.6508541 0.00000000 A
    ---
    > 8 9 2009-09-09 9:09 0.6174545 0.0000000 A
    > 9 10 2010-10-10 10:10 0.6508541 0.0000000 A
    589c585
    < X D E. F G Factor
    ---
    > X D E F G Factor
    596,600c592,596
    < 2 3 2003-03-03 3:03 0.3564875 -0.84147098 C
    < 3 4 2004-04-04 4:04 0.4116363 0.70807342
    < 4 5 2005-05-05 5:05 0.4602234 0.50136797 A
    < 5 6 2006-06-06 6:06 NA 0.25136984 B
    < 6 7 2007-07-07 7:07 0.5445436 0.06318679 B
    ---
    > 2 3 2003-03-03 3:03 0.3564875 -0.8414710 C
    > 3 4 2004-04-04 4:04 0.4116363 0.7080734
    > 4 5 2005-05-05 5:05 0.4602234 0.5013680 A
    > 5 6 2006-06-06 6:06 NA 0.2513698 B
    > 6 7 2007-07-07 7:07 0.5445436 0.0631868 B
    602,603c598,599
    < 8 9 2009-09-09 9:09 0.6174545 0.00000000 A
    < 9 10 2010-10-10 10:10 0.6508541 0.00000000 A
    ---
    > 8 9 2009-09-09 9:09 0.6174545 0.0000000 A
    > 9 10 2010-10-10 10:10 0.6508541 0.0000000 A
    606,610c602,606
    < 2 3 2003-03-03 3:03 0.3564875 -0.84147098 C
    < 3 4 2004-04-04 4:04 0.4116363 0.70807342
    < 4 5 2005-05-05 5:05 0.4602234 0.50136797 A
    < 5 6 2006-06-06 6:06 NA 0.25136984 B
    < 6 7 2007-07-07 7:07 0.5445436 0.06318679 B
    ---
    > 2 3 2003-03-03 3:03 0.3564875 -0.8414710 C
    > 3 4 2004-04-04 4:04 0.4116363 0.7080734
    > 4 5 2005-05-05 5:05 0.4602234 0.5013680 A
    > 5 6 2006-06-06 6:06 NA 0.2513698 B
    > 6 7 2007-07-07 7:07 0.5445436 0.0631868 B
    612,614c608,610
    < 8 9 2009-09-09 9:09 0.6174545 0.00000000 A
    < 9 10 2010-10-10 10:10 0.6508541 0.00000000 A
    < X D E. F G Factor
    ---
    > 8 9 2009-09-09 9:09 0.6174545 0.0000000 A
    > 9 10 2010-10-10 10:10 0.6508541 0.0000000 A
    > X D E F G Factor
    619c615
    < X X.1 D E. F G Factor
    ---
    > X X.1 D E F G Factor
    Running ‘test.write.fwf.eol.R’ [0s/0s]
    Running ‘tests.write.fwf.R’ [0s/0s]
    Comparing ‘tests.write.fwf.Rout’ to ‘tests.write.fwf.Rout.save’ ...17,20d16
    < The following object(s) are masked from 'package:stats':
    <
    < nobs
    <
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [1s/1s] OK
  • checking re-building of vignette PDFs ... [1s/2s] OK
  • checking PDF version of manual ... OK
    NOTE: There were 3 notes.
    See
    ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/gdata.Rcheck/00check.log’
    for details.