• using R Under development (unstable) (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘gRim/DESCRIPTION’ ... OK
• this is package ‘gRim’ version ‘0.1.7’
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘gRim’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  .CI_MC_prim: warning in matrix(t1R, nr = dim.R, byrow = TRUE): partial
  argument match of 'nr' to 'nrow'
  .CI_MC_prim: warning in matrix(t2R, nr = dim.R, byrow = TRUE): partial
  argument match of 'nr' to 'nrow'
  .CI_MC_prim: warning in matrix(x, nr = dim.R, byrow = TRUE): partial
  argument match of 'nr' to 'nrow'
  .CI_MC_prim: warning in matrix(NA, nr = dim.R, nc = B): partial
  argument match of 'nr' to 'nrow'
  .CI_MC_prim: warning in matrix(NA, nr = dim.R, nc = B): partial
  argument match of 'nc' to 'ncol'
  .CI_X2_prim: warning in matrix(t.v1R, nr = dim.R, byrow = TRUE):
  partial argument match of 'nr' to 'nrow'
  .CI_X2_prim: warning in matrix(t.v2R, nr = dim.R, byrow = TRUE):
  partial argument match of 'nr' to 'nrow'
  .CI_X2_prim: warning in matrix(tobs, nr = dim.R, byrow = TRUE): partial
  argument match of 'nr' to 'nrow'
  .weak.datamarg.cont: warning in matrix(rowSumsPrim(ssdA.i), nr =
  length(Ac.idx)): partial argument match of 'nr' to 'nrow'
  .weak.datamarg.mix: warning in matrix(0, nc = A.dim, nr = len.Ac):
  partial argument match of 'nr' to 'nrow'
  .weak.datamarg.mix: warning in matrix(0, nc = A.dim, nr = len.Ac):
  partial argument match of 'nc' to 'ncol'
  .weak.datamarg.mix: warning in matrix(0, nc = len.Ac, nr = len.Ac):
  partial argument match of 'nr' to 'nrow'
  .weak.datamarg.mix: warning in matrix(0, nc = len.Ac, nr = len.Ac):
  partial argument match of 'nc' to 'ncol'
  .weak.datamarg.mix: warning in matrix(vvv1, nr = length(Ac.idx)):
  partial argument match of 'nr' to 'nrow'
  .weak.modelmarg.mix: warning in matrix(0, nc = A.dim, nr = len.Ac):
  partial argument match of 'nr' to 'nrow'
  .weak.modelmarg.mix: warning in matrix(0, nc = A.dim, nr = len.Ac):
  partial argument match of 'nc' to 'ncol'
  .weak.modelmarg.mix: warning in matrix(0, nc = A.dim, nr =
  length(Mparms$p)/A.dim): partial argument match of 'nr' to 'nrow'
  .weak.modelmarg.mix: warning in matrix(0, nc = A.dim, nr =
  length(Mparms$p)/A.dim): partial argument match of 'nc' to 'ncol'
  .weak.modelmarg.mix: warning in matrix(QQ, nr = len.Ac): partial
  argument match of 'nr' to 'nrow'
  fit.dModel: warning in .loglinDecDim(rr$cliques, rr$separators, table =
  object$datainfo$data, adjust = TRUE): partial argument match of
  'table' to 'tableinfo'
  fit.dModel: warning in .loglinDecDim(rr$cliques, rr$separators, table =
  object$datainfo$data, adjust = FALSE): partial argument match of
  'table' to 'tableinfo'
  pms2ghkParms: warning in determinant.matrix(KK, log = FALSE): partial
  argument match of 'log' to 'logarithm'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [8s/8s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [6s/6s] OK
• checking re-building of vignette PDFs ... [7s/7s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/gRim.Rcheck/00check.log’
  for details.