• using R Under development (unstable) (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘fda.usc/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘fda.usc’ version ‘0.9.5’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
• checking for executable files ... OK
• checking whether package ‘fda.usc’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'anova.RPm':
  ‘anova.RPm’
  
  S3 methods shown with full name in documentation object 'anova.hetero':
  ‘anova.hetero’
  
  S3 methods shown with full name in documentation object 'influnce.fdata':
  ‘influence.fdata’
  
  S3 methods shown with full name in documentation object 'influence.quan':
  ‘influence.quan’
  
  S3 methods shown with full name in documentation object 'min.basis':
  ‘min.basis’
  
  S3 methods shown with full name in documentation object 'min.np':
  ‘min.np’
  
  S3 methods shown with full name in documentation object 'plot.fdata':
  ‘plot.fdata’ ‘lines.fdata’
  
  S3 methods shown with full name in documentation object 'predict.classif.fd':
  ‘predict.classif.fd’
  
  S3 methods shown with full name in documentation object 'predict.fregre.fd':
  ‘predict.fregre.fd’
  
  S3 methods shown with full name in documentation object 'predict.fregre.glm':
  ‘predict.fregre.glm’
  
  S3 methods shown with full name in documentation object 'predict.fregre.lm':
  ‘predict.fregre.lm’
  
  S3 methods shown with full name in documentation object 'predict.fregre.plm':
  ‘predict.fregre.plm’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... NOTE
  Note: found 76 marked UTF-8 strings
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [216s/216s] WARNING
  Found the following significant warnings:
  
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Warning: sd(<matrix>) is deprecated.
  Deprecated functions may be defunct as soon as of the next release of
  R.
  See ?Deprecated.
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There were 3 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/fda.usc.Rcheck/00check.log’
  for details.