• using R Under development (unstable) (2012-02-06 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘epitools/DESCRIPTION’ ... OK
• this is package ‘epitools’ version ‘0.5-6’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘epitools’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  colorbrewer.display: warning in matrix(rep(1:nex, rep(nclass, nex)), nr
  = nclass, nc = nex): partial argument match of 'nr' to 'nrow'
  colorbrewer.display: warning in matrix(rep(1:nex, rep(nclass, nex)), nr
  = nclass, nc = nex): partial argument match of 'nc' to 'ncol'
  colorbrewer.display: warning in matrix(rep(1:nclass, nex), nr = nclass,
  nc = nex): partial argument match of 'nr' to 'nrow'
  colorbrewer.display: warning in matrix(rep(1:nclass, nex), nr = nclass,
  nc = nex): partial argument match of 'nc' to 'ncol'
  colorbrewer.display: warning in rgb(cd.tn[, "red"], cd.tn[, "green"],
  cd.tn[, "blue"], max = 255): partial argument match of 'max' to
  'maxColorValue'
  colorbrewer.palette: warning in rgb(cd2$red, cd2$green, cd2$blue, max =
  255): partial argument match of 'max' to 'maxColorValue'
  colors.plot: warning in axis(1, at = 1:30, label = 1:30, cex.axis =
  cex.axis, tick = FALSE): partial argument match of 'label' to
  'labels'
  colors.plot: warning in axis(2, at = 1:22, label = 1:22, cex.axis =
  cex.axis, tick = FALSE, las = 1): partial argument match of 'label'
  to 'labels'
  or.midp : mue: warning in fisher.test(mm, or = or, alt = "l"): partial
  argument match of 'alt' to 'alternative'
  or.midp : mue: warning in fisher.test(x = x, or = or, alt = "g"):
  partial argument match of 'alt' to 'alternative'
  or.midp : midp: warning in fisher.test(mm, or = or, alt = "l"): partial
  argument match of 'alt' to 'alternative'
  or.midp : midp: warning in fisher.test(mm, or = or, alt = "g"): partial
  argument match of 'alt' to 'alternative'
  ormidp.test: warning in fisher.test(x, or = or, alt = "l"): partial
  argument match of 'alt' to 'alternative'
  ormidp.test: warning in fisher.test(x, or = or, alt = "g"): partial
  argument match of 'alt' to 'alternative'
  table.margins: warning in matrix(t(z), nr = dd[2]): partial argument
  match of 'nr' to 'nrow'
  table.margins: warning in matrix(t(z2), nr = prod(dd[-c(1, 2)])):
  partial argument match of 'nr' to 'nrow'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... WARNING
  Warning: parse error in file ‘epitools-Ex.R’:
  5: unexpected numeric constant
  78: dth60 <- scan()
  79: 141 926
  ^
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [2s/2s] OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/epitools.Rcheck/00check.log’
  for details.