• using R Under development (unstable) (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘diptest/DESCRIPTION’ ... OK
• this is package ‘diptest’ version ‘0.75-1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘diptest’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  plot.dip: warning in axis(3, at = x12, label = expression(x[L], x[U]),
  tick = FALSE, col.axis = colM): partial argument match of 'label' to
  'labels'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files look like leftovers/mistakes:
  ‘diptest-issues.bbl’
  Please remove them from your package.
  The following files should probably not be installed:
  ‘myVignette.sty’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [2s/2s] OK
  Running ‘ex1.R’ [0s/0s]
  Comparing ‘ex1.Rout’ to ‘ex1.Rout.save’ ...18c18
  < ** (l_lcm,l_gcm) = (2,2) ==> d := -0
  ---
  > ** (l_lcm,l_gcm) = (2,2) ==> d := 1
  36c36
  < ** (l_lcm,l_gcm) = (2,2) ==> d := -0
  ---
  > ** (l_lcm,l_gcm) = (2,2) ==> d := 1.33333
  47,50c47,50
  < G(2,3) --> ix = 1, iv = 3
  < calculating dip .. (dip_l, dip_u) = (1.33333, 0) -> new larger dip 1.33333 (j_best = 2)
  < 'dip': LOOP-BEGIN: 2n*D= 1.3333 [low,high] = [ 3, 4]; l_lcm/gcm = ( 2, 2)
  < ** (l_lcm,l_gcm) = (2,2) ==> d := -0
  ---
  > --> ix = 1, iv = 3
  > calculating dip .. (dip_l, dip_u) = (0, 1.33333) -> new larger dip 1.33333 (j_best = 3)
  > 'dip': LOOP-BEGIN: 2n*D= 1.3333 [low,high] = [ 1, 2]; l_lcm/gcm = ( 2, 2)
  > ** (l_lcm,l_gcm) = (2,2) ==> d := 1.33333
  75c75
  < $ lo.hi : int [1:2] 3 4
  ---
  > $ lo.hi : int [1:2] 1 2
  77,78c77,78
  < $ gcm : int [1:2] 4 3
  < $ lcm : int [1:2] 3 4
  ---
  > $ gcm : int [1:2] 2 1
  > $ lcm : int [1:2] 1 2
  83,84c83,84
  < $ xl : num 3
  < $ xu : num 4
  ---
  > $ xl : num 0
  > $ xu : num 1
  Running ‘mechler-ex.R’ [0s/0s]
  Comparing ‘mechler-ex.Rout’ to ‘mechler-ex.Rout.save’ ...81c81
  < ** (l_lcm,l_gcm) = (2,2) ==> d := -0
  ---
  > ** (l_lcm,l_gcm) = (2,2) ==> d := 1
  Running ‘sim1.R’ [1s/2s]
  Comparing ‘sim1.Rout’ to ‘sim1.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [4s/4s] OK
• checking re-building of vignette PDFs ... [5s/5s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/diptest.Rcheck/00check.log’
  for details.