• using R Under development (unstable) (2012-02-04 r58267)
  • using platform: i686-pc-linux-gnu (32-bit)
  • using session charset: UTF-8
  • checking for file ‘clustvarsel/DESCRIPTION’ ... OK
  • this is package ‘clustvarsel’ version ‘1.3’
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... NOTE
    As from R 2.14.0 all packages need a namespace.
    One will be generated on installation, but it is better to handcraft a
    NAMESPACE file: R CMD build will produce a suitable starting point.
  • checking for executable files ... OK
  • checking whether package ‘clustvarsel’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... WARNING
    ‘library’ or ‘require’ call not declared from: ‘MASS’
  • checking for left-overs from vignette generation ... WARNING
    file ‘inst/doc/Rplots.ps’ will not be installed: please remove it
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... NOTE
    The following files should probably not be installed:
    ‘chicago.bst’, ‘chicago.sty’

    Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
    or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
  • checking examples ... ERROR
    Running examples in ‘clustvarsel-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: clustvarsel
    > ### Title: Variable selection for Model-Based Clustering
    > ### Aliases: clustvarsel
    > ### Keywords: cluster
    >
    > ### ** Examples
    >
    > #Create 3-d data with 2 clusters in the first two variables and no
    > #clustering in the rest
    > X<-matrix(0,200,3)
    > colnames(X)<-1:3
    > #clusters have mixing proportion pro, means mu1 and mu2 and variances
    > #sigma1 and sigma2
    > pro<-0.5
    > mu1<-c(0,0)
    > mu2<-c(3,3)
    > sigma1<-matrix(c(1,0.5,0.5,1),2,2,byrow=TRUE)
    > sigma2<-matrix(c(1.5,-0.7,-0.7,1.5),2,2,byrow=TRUE)
    > u<-runif(200)
    > library(MASS)
    Error in library(MASS) : there is no package called ‘MASS’
    Execution halted