• using R Under development (unstable) (2012-02-23 r58468)
  • using platform: i686-pc-linux-gnu (32-bit)
  • using session charset: UTF-8
  • checking for file ‘caroline/DESCRIPTION’ ... OK
  • this is package ‘caroline’ version ‘0.6.9’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package ‘caroline’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    .heatmap.2: no visible global function definition for ‘invalid’
    .heatmap.2: no visible global function definition for ‘heatmap.2.key’
    .vio.stats: no visible global function definition for ‘description’
    dbWriteTable2: no visible binding for global variable ‘db.nchars’
    hyperplot: no visible binding for global variable ‘out’
    violins: no visible global function definition for ‘.cat2list’
  • checking Rd files ... NOTE
    prepare_Rd: addFactLevs.Rd:14-15: Dropping empty section \seealso
    prepare_Rd: addFactLevs.Rd:16-17: Dropping empty section \examples
    prepare_Rd: dbWriteTable2.Rd:25-26: Dropping empty section \examples
    prepare_Rd: groupBy.Rd:42: Dropping empty section \keyword
    prepare_Rd: leghead.Rd:36: Dropping empty section \keyword
    prepare_Rd: raAddArms.Rd:23: Dropping empty section \keyword
    prepare_Rd: raAddArms.Rd:21-22: Dropping empty section \examples
    prepare_Rd: raAddAxLabs.Rd:21: Dropping empty section \keyword
    prepare_Rd: raAddAxLabs.Rd:19-20: Dropping empty section \examples
    prepare_Rd: raAddSigLines.Rd:24: Dropping empty section \keyword
    prepare_Rd: raAddSigLines.Rd:22-23: Dropping empty section \examples
    prepare_Rd: regroup.Rd:17-18: Dropping empty section \seealso
    prepare_Rd: wjitter.Rd:23: Dropping empty section \keyword
    prepare_Rd: write.delim.Rd:30: Dropping empty section \keyword
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking examples ... [2s/2s] OK
  • checking PDF version of manual ... OK
    NOTE: There were 2 notes.
    See
    ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/caroline.Rcheck/00check.log’
    for details.