• using R Under development (unstable) (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘cacher/DESCRIPTION’ ... OK
• this is package ‘cacher’ version ‘1.1-1’
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: ‘CodeDepends’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘cacher’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  abbreviateExpr: warning in deparse(expr[[1]], width = exprWidth):
  partial argument match of 'width' to 'width.cutoff'
  code : <anonymous>: warning in deparse(x, width =
  getConfig("exprDeparseWidth")): partial argument match of 'width' to
  'width.cutoff'
  graphcode: no visible global function definition for
  ‘makeVariableGraph’
  objectcode : <anonymous>: no visible global function definition for
  ‘getDependsThread’
  readDoc: no visible global function definition for ‘readScript’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files are already in R: ‘jss.bst’, ‘jss.cls’
  Please remove them from your package.
• checking examples ... [0s/0s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [0s/0s] OK
  Running ‘reg-tests.R’ [0s/0s]
  Comparing ‘reg-tests.Rout’ to ‘reg-tests.Rout.save’ ...11c11
  < [1] "cda5e1502d5174632f18efeabd1ae6681860a20d"
  ---
  > [1] "bad2ec258d6502bddf44e71939857bb55094634c"
  13c13
  < [1] "cda5e1502d5174632f18efeabd1ae6681860a20d"
  ---
  > [1] "bad2ec258d6502bddf44e71939857bb55094634c"
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [0s/0s] OK
• checking re-building of vignette PDFs ... [5s/5s] OK
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/cacher.Rcheck/00check.log’
  for details.