* installing to library ‘/home/hornik/tmp/R.check/r-devel/Work/build/Packages’
* installing *source* package ‘bayesSurv’ ...
** package ‘bayesSurv’ successfully unpacked and MD5 sums checked
** Creating default NAMESPACE file
** libs
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c AK_BLAS_LAPACK.cpp -o AK_BLAS_LAPACK.o
In file included from AK_BLAS_LAPACK.h:12:0,
                 from AK_BLAS_LAPACK.cpp:70:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c ARS2.cpp -o ARS2.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c GMRF.cpp -o GMRF.o
In file included from GMRF.h:10:0,
                 from GMRF.cpp:35:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c GMRF_Gspline.cpp -o GMRF_Gspline.o
In file included from GMRF_Gspline.h:10:0,
                 from GMRF_Gspline.cpp:20:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c GMRF_Gspline_Util.cpp -o GMRF_Gspline_Util.o
In file included from GMRF_Gspline_Util.h:10:0,
                 from GMRF_Gspline_Util.cpp:28:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c Gspline.cpp -o Gspline.o
In file included from Gspline.h:20:0,
                 from Gspline.cpp:7:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c Gspline_update_Intcpt.cpp -o Gspline_update_Intcpt.o
In file included from Gspline.h:20:0,
                 from Gspline_update_Intcpt.cpp:9:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c Gspline_update_Scale.cpp -o Gspline_update_Scale.o
In file included from Gspline.h:20:0,
                 from Gspline_update_Scale.cpp:10:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c Gspline_update_a.cpp -o Gspline_update_a.o
In file included from Gspline.h:20:0,
                 from Gspline_update_a.cpp:26:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c Gspline_update_gamma.cpp -o Gspline_update_gamma.o
In file included from Gspline.h:20:0,
                 from Gspline_update_gamma.cpp:10:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c Gspline_update_lambda.cpp -o Gspline_update_lambda.o
In file included from Gspline.h:20:0,
                 from Gspline_update_lambda.cpp:13:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c Gspline_update_sigma.cpp -o Gspline_update_sigma.o
In file included from Gspline.h:20:0,
                 from Gspline_update_sigma.cpp:14:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c List.cpp -o List.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c MHblocks.cpp -o MHblocks.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c MHproposal.cpp -o MHproposal.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c Mvtdist3.cpp -o Mvtdist3.o
In file included from AK_BLAS_LAPACK.h:12:0,
                 from Mvtdist3.h:12,
                 from Mvtdist3.cpp:33:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c Slice_sampler2.cpp -o Slice_sampler2.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c arms.cpp -o arms.o
arms.cpp: In function ‘int arms_simple(int, double*, double*, double (*)(double, void*), void*, int, double*, double*)’:
arms.cpp:154:21: warning: ISO C++ forbids variable length array ‘xinit’ [-Wvla]
arms.cpp: In function ‘void display(FILE*, ENVELOPE*)’:
arms.cpp:902:51: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 4 has type ‘POINT* {aka point*}’ [-Wformat]
arms.cpp:912:69: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 3 has type ‘POINT* {aka point*}’ [-Wformat]
arms.cpp:912:69: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 4 has type ‘point*’ [-Wformat]
arms.cpp:912:69: warning: format ‘%x’ expects argument of type ‘unsigned int’, but argument 5 has type ‘point*’ [-Wformat]
arms.cpp: In function ‘int meet(POINT*, ENVELOPE*, METROPOLIS*)’:
arms.cpp:799:25: warning: ‘dl’ may be used uninitialized in this function [-Wuninitialized]
arms.cpp:762:3: warning: ‘gr’ may be used uninitialized in this function [-Wuninitialized]
arms.cpp:752:3: warning: ‘gl’ may be used uninitialized in this function [-Wuninitialized]
arms.cpp: In function ‘void invert(double, ENVELOPE*, POINT*)’:
arms.cpp:470:3: warning: ‘xr’ may be used uninitialized in this function [-Wuninitialized]
arms.cpp:470:3: warning: ‘xl’ may be used uninitialized in this function [-Wuninitialized]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c arrays2Mat.cpp -o arrays2Mat.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c bayesBisurvreg.cpp -o bayesBisurvreg.o
In file included from Gspline.h:20:0,
                 from classBetaGamma.h:15,
                 from bayesBisurvreg.h:16,
                 from bayesBisurvreg.cpp:10:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c bayesDensity.cpp -o bayesDensity.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c bayesGspline.cpp -o bayesGspline.o
In file included from Gspline.h:20:0,
                 from in_output_GS.h:16,
                 from bayesGspline.h:15,
                 from bayesGspline.cpp:16:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c bayesHistogram.cpp -o bayesHistogram.o
In file included from Gspline.h:20:0,
                 from bayesHistogram.h:15,
                 from bayesHistogram.cpp:10:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c bayessurvreg1.cpp -o bayessurvreg1.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c bayessurvreg2.cpp -o bayessurvreg2.o
In file included from Gspline.h:20:0,
                 from classRandomEff.h:17,
                 from classCovMatrixExtend.h:13,
                 from bayessurvreg2.h:10,
                 from bayessurvreg2.cpp:22:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c bblocks.cpp -o bblocks.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c birthDeath.cpp -o birthDeath.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c checkImputeData.cpp -o checkImputeData.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c cholesky.cpp -o cholesky.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c classBetaGamma.cpp -o classBetaGamma.o
In file included from Gspline.h:20:0,
                 from classBetaGamma.h:15,
                 from classBetaGamma.cpp:11:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c classBetaGammaExtend.cpp -o classBetaGammaExtend.o
In file included from Gspline.h:20:0,
                 from classBetaGamma.h:15,
                 from classBetaGammaExtend.h:14,
                 from classBetaGammaExtend.cpp:13:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c classCovMatrix.cpp -o classCovMatrix.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c classCovMatrixExtend.cpp -o classCovMatrixExtend.o
In file included from Gspline.h:20:0,
                 from classRandomEff.h:17,
                 from classCovMatrixExtend.h:13,
                 from classCovMatrixExtend.cpp:8:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c classRandomEff.cpp -o classRandomEff.o
In file included from Gspline.h:20:0,
                 from classRandomEff.h:17,
                 from classRandomEff.cpp:14:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c classRandomEff_rhoNorm.cpp -o classRandomEff_rhoNorm.o
In file included from classRandomEff_rhoNorm.h:10:0,
                 from classRandomEff_rhoNorm.cpp:13:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c covMatrix.cpp -o covMatrix.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c in_output.cpp -o in_output.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c in_output_GS.cpp -o in_output_GS.o
In file included from Gspline.h:20:0,
                 from in_output_GS.h:16,
                 from in_output_GS.cpp:29:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c logLikelihood.cpp -o logLikelihood.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c marginal_bayesGspline.cpp -o marginal_bayesGspline.o
In file included from Gspline.h:20:0,
                 from in_output_GS.h:16,
                 from marginal_bayesGspline.h:15,
                 from marginal_bayesGspline.cpp:7:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c miscellaneous.cpp -o miscellaneous.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c miscellaneous_GS.cpp -o miscellaneous_GS.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c mixMoments.cpp -o mixMoments.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c moodyRing.cpp -o moodyRing.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c mvtdist.cpp -o mvtdist.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c newton_raphson.cpp -o newton_raphson.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c openFile.cpp -o openFile.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c predictMisc.cpp -o predictMisc.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c predictive.cpp -o predictive.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c predictive_GS.cpp -o predictive_GS.o
In file included from Gspline.h:20:0,
                 from classBetaGamma.h:15,
                 from predictive_GS.h:11,
                 from predictive_GS.cpp:19:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c propVector.cpp -o propVector.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c qrdecomp.cpp -o qrdecomp.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c quantile.cpp -o quantile.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c random.cpp -o random.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c randomLogLikelihood.cpp -o randomLogLikelihood.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c regresResidual_GS.cpp -o regresResidual_GS.o
In file included from Gspline.h:20:0,
                 from classBetaGamma.h:15,
                 from regresResidual_GS.h:14,
                 from regresResidual_GS.cpp:8:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c rhoNorm.cpp -o rhoNorm.o
In file included from rhoNorm.h:10:0,
                 from rhoNorm.cpp:24:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c sampledKendallTau.cpp -o sampledKendallTau.o
In file included from Gspline.h:20:0,
                 from in_output_GS.h:16,
                 from sampledKendallTau.h:15,
                 from sampledKendallTau.cpp:9:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c splitCombine.cpp -o splitCombine.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c structRandomEff32.cpp -o structRandomEff32.o
In file included from AK_BLAS_LAPACK.h:12:0,
                 from structRandomEff32.h:10,
                 from structRandomEff32.cpp:18:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c templatefun.cpp -o templatefun.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c templatefun_GS.cpp -o templatefun_GS.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c updateAlloc.cpp -o updateAlloc.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c updateCovMatRandom.cpp -o updateCovMatRandom.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c updateData.cpp -o updateData.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c updateEta.cpp -o updateEta.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c updateMeans.cpp -o updateMeans.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c updateRandom.cpp -o updateRandom.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c updateRegres.cpp -o updateRegres.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c updateVars.cpp -o updateVars.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c updateWeights.cpp -o updateWeights.o
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c update_Alloc_GS.cpp -o update_Alloc_GS.o
In file included from Gspline.h:20:0,
                 from update_Alloc_GS.h:16,
                 from update_Alloc_GS.cpp:8:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -I/home/hornik/tmp/R.check/r-devel/Work/build/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2 -Wall -Wno-unused -pedantic -c update_Data_GS.cpp -o update_Data_GS.o
In file included from Gspline.h:20:0,
                 from update_Data_GS.h:12,
                 from update_Data_GS.cpp:9:
AK_BasicFun.h:39:2: warning: extra ‘;’ [-pedantic]
AK_BasicFun.h:46:2: warning: extra ‘;’ [-pedantic]
g++ -shared -L/usr/local/lib -o bayesSurv.so AK_BLAS_LAPACK.o ARS2.o GMRF.o GMRF_Gspline.o GMRF_Gspline_Util.o Gspline.o Gspline_update_Intcpt.o Gspline_update_Scale.o Gspline_update_a.o Gspline_update_gamma.o Gspline_update_lambda.o Gspline_update_sigma.o List.o MHblocks.o MHproposal.o Mvtdist3.o Slice_sampler2.o arms.o arrays2Mat.o bayesBisurvreg.o bayesDensity.o bayesGspline.o bayesHistogram.o bayessurvreg1.o bayessurvreg2.o bblocks.o birthDeath.o checkImputeData.o cholesky.o classBetaGamma.o classBetaGammaExtend.o classCovMatrix.o classCovMatrixExtend.o classRandomEff.o classRandomEff_rhoNorm.o covMatrix.o in_output.o in_output_GS.o logLikelihood.o marginal_bayesGspline.o miscellaneous.o miscellaneous_GS.o mixMoments.o moodyRing.o mvtdist.o newton_raphson.o openFile.o predictMisc.o predictive.o predictive_GS.o propVector.o qrdecomp.o quantile.o random.o randomLogLikelihood.o regresResidual_GS.o rhoNorm.o sampledKendallTau.o splitCombine.o structRandomEff32.o templatefun.o templatefun_GS.o updateAlloc.o updateCovMatRandom.o updateData.o updateEta.o updateMeans.o updateRandom.o updateRegres.o updateVars.o updateWeights.o update_Alloc_GS.o update_Data_GS.o -L/home/hornik/tmp/R.check/r-devel/Work/build/lib -lRlapack -L/home/hornik/tmp/R.check/r-devel/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel/Work/build/lib -lR
installing to /home/hornik/tmp/R.check/r-devel/Work/build/Packages/bayesSurv/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
running .First.lib() for package ‘bayesSurv’ as .onLoad/.onAttach were not found

* DONE (bayesSurv)