• using R version 2.11.0 Under development (unstable) (2010-02-01 r51089)
• using session charset: UTF-8
• checking for file 'aaMI/DESCRIPTION' ... OK
• this is package 'aaMI' version '1.0-1'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'aaMI' can be installed ... WARNING
  Found the following significant warnings:
  Warning: ./man/read.CX.Rd:9: unexpected UNKNOWN '\Details'
  Warning: ./man/read.CX.Rd:11: All text must be in a section
  Warning: ./man/read.FASTA.Rd:9: unexpected UNKNOWN '\Details'
  Warning: ./man/read.FASTA.Rd:11: All text must be in a section
  Warning: ./man/read.GDoc.Rd:9: unexpected UNKNOWN '\Details'
  Warning: ./man/read.GDoc.Rd:11: All text must be in a section
  See http://www.r-project.org/nosvn/R.check/r-devel-linux-ix86/aaMI-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... NOTE
  Non-standard license specification:
  GPL version 2 or newer
  Standardizable: TRUE
  Standardized license specification:
  GPL (>= 2)
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Found possibly global 'T' or 'F' in the following functions:
  read.CX read.FASTA read.GDoc
• checking Rd files ... WARNING
  prepare_Rd: read.CX.Rd:9: unexpected UNKNOWN '\Details'
  prepare_Rd: read.CX.Rd:11: All text must be in a section
  prepare_Rd: read.FASTA.Rd:9: unexpected UNKNOWN '\Details'
  prepare_Rd: read.FASTA.Rd:11: All text must be in a section
  prepare_Rd: read.GDoc.Rd:9: unexpected UNKNOWN '\Details'
  prepare_Rd: read.GDoc.Rd:11: All text must be in a section
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking examples ... OK
• checking PDF version of manual ... OK