• using R Under development (unstable) (2012-02-04 r58267)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• using option ‘--no-vignettes’
• checking for file ‘Zelig/DESCRIPTION’ ... OK
• this is package ‘Zelig’ version ‘3.5.3’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘Zelig’ can be installed ... OK
• checking installed package size ... NOTE
  installed size is 6.9Mb
  sub-directories of 1Mb or more:
  doc 5.7Mb
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘Zelig/R/load.first.R’:
  .onAttach calls:
  cat(paste("## \n## Zelig (Version ", ver, ", built: ", builddate, ")\n", sep = ""))
  cat("## Please refer to http://gking.harvard.edu/zelig for full\n", "## documentation or help.zelig() for help with commands and\n", "## models supported by Zelig.\n##\n\n", sep = "")
  cat("## Zelig project citations:\n", "## Kosuke Imai, Gary King, and Olivia Lau. (2009).\n", "## ``Zelig: Everyone's Statistical Software,''\n", "## http://gking.harvard.edu/zelig.\n", "## and\n", "## Kosuke Imai, Gary King, and Olivia Lau. (2008).\n", "## ``Toward A Common Framework for Statistical Analysis\n", "## and Development,'' Journal of Computational and\n", "## Graphical Statistics, Vol. 17, No. 4 (December)\n", "## pp. 892-913. \n\n", "## To cite individual Zelig models, please use the citation format printed with\n", "## each model run and in the documentation.\n##\n", sep = "")
  
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  .onAttach: warning in packageDescription("Zelig", lib = mylib): partial
  argument match of 'lib' to 'lib.loc'
  cmei: warning in assign(data, as.character(data), env = .GlobalEnv):
  partial argument match of 'env' to 'envir'
  current.packages : required.packages: warning in
  packageDescription(pack, lib = mylib): partial argument match of
  'lib' to 'lib.loc'
  current.packages: warning in packageDescription(packages[i], lib =
  mylib): partial argument match of 'lib' to 'lib.loc'
  gamma.net : gfit: warning in matrix(x, nc = 1): partial argument match
  of 'nc' to 'ncol'
  gamma.net : gfitlm: warning in matrix(x, nc = 1): partial argument
  match of 'nc' to 'ncol'
  gamma.net: warning in rgraph(n, tp = gden(g[[i + 1]], mode = mode, diag
  = diag), mode = mode, diag = diag): partial argument match of 'tp' to
  'tprob'
  logit.net.zelig : gfit: warning in matrix(x, nc = 1): partial argument
  match of 'nc' to 'ncol'
  logit.net.zelig : gfitlm: warning in matrix(x, nc = 1): partial
  argument match of 'nc' to 'ncol'
  logit.net.zelig: warning in rgraph(n, tp = gden(g[[i + 1]], mode =
  mode, diag = diag), mode = mode, diag = diag): partial argument match
  of 'tp' to 'tprob'
  netbinom : gfit: warning in matrix(x, nc = 1): partial argument match
  of 'nc' to 'ncol'
  netbinom : gfitlm: warning in matrix(x, nc = 1): partial argument match
  of 'nc' to 'ncol'
  netbinom: warning in rgraph(n, tp = gden(g[[i + 1]], mode = mode, diag
  = diag), mode = mode, diag = diag): partial argument match of 'tp' to
  'tprob'
  normal.net : gfit: warning in matrix(x, nc = 1): partial argument match
  of 'nc' to 'ncol'
  normal.net : gfitlm: warning in matrix(x, nc = 1): partial argument
  match of 'nc' to 'ncol'
  normal.net: warning in rgraph(n, tp = gden(g[[i + 1]], mode = mode,
  diag = diag), mode = mode, diag = diag): partial argument match of
  'tp' to 'tprob'
  param.lm: warning in matrix(coef, nr = num): partial argument match of
  'nr' to 'nrow'
  param.polr: warning in matrix(mvrnorm(num, mu = c(coef, theta), Sigma =
  vcov(object)), nr = num): partial argument match of 'nr' to 'nrow'
  param.rq: warning in summary.rq(object, cov = TRUE, se = object$se):
  partial argument match of 'cov' to 'covariance'
  parse.par: warning in make.parameters(terms = terms, eqn = eqn, shape =
  "vector"): partial argument match of 'eqn' to 'eqns'
  parse.par: warning in make.parameters(terms = terms, eqn = eqn, shape =
  "matrix"): partial argument match of 'eqn' to 'eqns'
  poisson.net : gfit: warning in matrix(x, nc = 1): partial argument
  match of 'nc' to 'ncol'
  poisson.net : gfitlm: warning in matrix(x, nc = 1): partial argument
  match of 'nc' to 'ncol'
  poisson.net: warning in rgraph(n, tp = gden(g[[i + 1]], mode = mode,
  diag = diag), mode = mode, diag = diag): partial argument match of
  'tp' to 'tprob'
  print.summary.lm.robust: warning in symnum(correl, abbr.col = NULL):
  partial argument match of 'abbr.col' to 'abbr.colnames'
  setx.rq: warning in eval(mc, env = env): partial argument match of
  'env' to 'envir'
  setx.rqs: warning in eval(mc, env = parent.frame()): partial argument
  match of 'env' to 'envir'
  terms.zaovlist: warning in deparse(errorterm, width = 500, backtick =
  TRUE): partial argument match of 'width' to 'width.cutoff'
  terms.zaovlist: warning in deparse(errorterm[[2]], width = 500,
  backtick = TRUE): partial argument match of 'width' to 'width.cutoff'
  updatefn: warning in get("mode", env = ev): partial argument match of
  'env' to 'envir'
  updatefn: warning in get("median", env = ev): partial argument match of
  'env' to 'envir'
  updatefn: warning in get("max", env = ev): partial argument match of
  'env' to 'envir'
  updatefn: warning in get("min", env = ev): partial argument match of
  'env' to 'envir'
  updatefn: warning in get("mode", env = global): partial argument match
  of 'env' to 'envir'
  updatefn: warning in get("median.default", env = global): partial
  argument match of 'env' to 'envir'
  updatefn: warning in get("min", env = global): partial argument match
  of 'env' to 'envir'
  updatefn: warning in get("max", env = global): partial argument match
  of 'env' to 'envir'
  vcov.logit.net: warning in summary.glm(object, corr = FALSE, ...):
  partial argument match of 'corr' to 'correlation'
  vcov.netglm: warning in summary.glm(object, corr = FALSE, ...): partial
  argument match of 'corr' to 'correlation'
  vcov.netlm: warning in summary.lm(object, corr = FALSE, ...): partial
  argument match of 'corr' to 'correlation'
  zelig2gamma.survey: warning in svydesign(data = data, ids = ids, probs
  = probs, strata = strata, fpc = fpc, nest = nest, check.strata =
  check.strata, weight = weights): partial argument match of 'weight'
  to 'weights'
  zelig2logit.survey: warning in svydesign(data = data, ids = ids, probs
  = probs, strata = strata, fpc = fpc, nest = nest, check.strata =
  check.strata, weight = weights): partial argument match of 'weight'
  to 'weights'
  zelig2normal.survey: warning in svydesign(data = data, ids = ids, probs
  = probs, strata = strata, fpc = fpc, nest = nest, check.strata =
  check.strata, weight = weights): partial argument match of 'weight'
  to 'weights'
  zelig2poisson.survey: warning in svydesign(data = data, ids = ids,
  probs = probs, strata = strata, fpc = fpc, nest = nest, check.strata
  = check.strata, weight = weights): partial argument match of 'weight'
  to 'weights'
  zelig2probit.survey: warning in svydesign(data = data, ids = ids, probs
  = probs, strata = strata, fpc = fpc, nest = nest, check.strata =
  check.strata, weight = weights): partial argument match of 'weight'
  to 'weights'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'model.frame.multiple':
  ‘model.frame.multiple’
  
  S3 methods shown with full name in documentation object 'model.matrix.multiple':
  ‘model.matrix.multiple’
  
  S3 methods shown with full name in documentation object 'plot.ci':
  ‘plot.ci’
  
  S3 methods shown with full name in documentation object 'plot.surv':
  ‘plot.surv’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files are already in R: ‘Rd.sty’, ‘Sweave.sty’
  Please remove them from your package.
  The following files should probably not be installed:
  ‘arima.tex’, ‘asa.bst’, ‘citeZelig.tex’, ‘html.sty’, ‘ologit.tex’,
  ‘upquote.sty’, ‘zinput.tex’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... [6s/6s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... SKIPPED
• checking re-building of vignettes ... SKIPPED
• checking PDF version of manual ... OK
  NOTE: There were 4 notes.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/Zelig.Rcheck/00check.log’
  for details.