• using R version 2.11.0 Under development (unstable) (2009-11-06 r50317)
• using session charset: UTF-8
• checking for file 'Umacs/DESCRIPTION' ... OK
• this is package 'Umacs' version '0.924'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'Umacs' can be installed ... WARNING
  Found the following significant warnings:
  Warning: ./man/Umacs-package.Rd:7: unknown macro '\crVersion'
  Warning: ./man/Umacs-package.Rd:7: unknown macro '\crDate'
  Warning: ./man/Umacs-package.Rd:7: unknown macro '\crNamespace'
  Warning: ./man/Umacs-package.Rd:7: unknown macro '\crEnhances'
  Warning: ./man/Umacs-package.Rd:7: unknown macro '\crDepends'
  Warning: ./man/Umacs-package.Rd:7: unknown macro '\crLicense'
  See http://www.r-project.org/nosvn/R.check/r-devel-linux-ix86/Umacs-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  .adaptPlot: no visible binding for '<<-' assignment to ‘en’
  .adaptPlot: no visible binding for global variable ‘x’
  .adaptPlot: no visible binding for '<<-' assignment to ‘lm1’
  .adaptPlot: no visible binding for '<<-' assignment to ‘b1’
  .adaptPlot: no visible binding for global variable ‘lm1’
  .adaptPlot: no visible binding for global variable ‘b1’
  .adaptPlot: no visible binding for '<<-' assignment to ‘b2’
  .adaptPlot: no visible binding for global variable ‘b2’
  .adaptPlot: no visible binding for '<<-' assignment to ‘fp’
  .adaptPlot: no visible binding for '<<-' assignment to ‘lm2’
  .adaptPlot: no visible binding for global variable ‘lm2’
  .compute.eigen: no visible global function definition for ‘error’
  .fundef: no visible binding for global variable ‘FUN’
  .make.sampler.Sampler : make.chainsampler: no visible binding for
  global variable ‘tpl.fun.make.chainsampler’
  .make.sampler.Sampler: no visible binding for global variable
  ‘tpl.init.sampler’
  .make.sampler.Sampler: no visible binding for global variable
  ‘tpl.init.trace’
  .make.sampler.Sampler : .sampler: no visible binding for global
  variable ‘TITLE’
  .make.sampler.Sampler : .sampler: no visible binding for global
  variable ‘tpl.end.sampler’
  .make.sampler.Sampler : .sampler: no visible binding for global
  variable ‘DATE’
  .tpl.adapt.Metropolis: no visible binding for global variable
  ‘code.Sigma.scale.specified’
  .tpl.adapt.Metropolis: no visible binding for '<<-' assignment to
  ‘Sigma.scale’
  .tpl.adapt.Metropolis: no visible global function definition for
  ‘scaleAdapt’
  .tpl.adapt.Metropolis: no visible binding for global variable ‘PARAM’
  .tpl.adapt.Metropolis: no visible binding for global variable
  ‘avg.p.jump’
  .tpl.adapt.Metropolis: no visible binding for global variable
  ‘Sigma.scale’
  .tpl.adapt.Metropolis: no visible binding for global variable
  ‘old.avg.p.jumps’
  .tpl.adapt.Metropolis: no visible binding for global variable
  ‘old.scales’
  .tpl.adapt.Metropolis: no visible global function definition for
  ‘ifdebug’
  .tpl.adapt.Metropolis: no visible binding for global variable ‘QPARAM’
  .tpl.adapt.Metropolis: no visible binding for global variable ‘jumps’
  .tpl.adapt.Metropolis: no visible binding for '<<-' assignment to
  ‘Sigma.shape’
  .tpl.adapt.Metropolis: no visible binding for global variable
  ‘Sigma.shape’
  .tpl.adapt.Metropolis: no visible binding for '<<-' assignment to
  ‘Sigma.jump’
  .tpl.adapt.Metropolis: no visible binding for '<<-' assignment to
  ‘Sigma.jump.eigen’
  .tpl.adapt.Metropolis: no visible binding for global variable
  ‘Sigma.jump’
  .tpl.adapt.PMetropolis: no visible binding for global variable
  ‘code.Sigma.scale.specified’
  .tpl.adapt.PMetropolis: no visible binding for '<<-' assignment to
  ‘Sigma.scale’
  .tpl.adapt.PMetropolis: no visible global function definition for
  ‘scaleAdapt’
  .tpl.adapt.PMetropolis: no visible binding for global variable ‘PARAM’
  .tpl.adapt.PMetropolis: no visible binding for global variable
  ‘avg.p.jump’
  .tpl.adapt.PMetropolis: no visible binding for global variable
  ‘Sigma.scale’
  .tpl.adapt.PMetropolis: no visible binding for global variable
  ‘old.avg.p.jumps’
  .tpl.adapt.PMetropolis: no visible binding for global variable
  ‘old.scales’
  .tpl.adapt.PMetropolis: no visible global function definition for
  ‘ifdebug’
  .tpl.adapt.PMetropolis: no visible binding for global variable ‘QPARAM’
  .tpl.adapt.PMetropolis: no visible binding for global variable ‘jumps’
  .tpl.adapt.PMetropolis: no visible binding for global variable
  ‘dimension’
  .tpl.adapt.PMetropolis: no visible binding for global variable
  ‘n.jumps’
  .tpl.adapt.PMetropolis: no visible binding for global variable ‘vec’
  .tpl.adapt.PMetropolis: no visible binding for '<<-' assignment to
  ‘Sigma.jump’
  .tpl.adapt.PMetropolis: no visible binding for global variable
  ‘Sigma.jump’
  .tpl.adapt.PMetropolis: no visible binding for '<<-' assignment to
  ‘Sigma.jump.eigen’
  .tpl.adapt.PMetropolis: no visible binding for global variable
  ‘Sigma.jump.eigen’
  .tpl.adapt.PSMetropolis: no visible binding for global variable
  ‘code.Sigma.scale.specified’
  .tpl.adapt.PSMetropolis: no visible binding for '<<-' assignment to
  ‘Sigma.scale’
  .tpl.adapt.PSMetropolis: no visible global function definition for
  ‘scaleAdapt’
  .tpl.adapt.PSMetropolis: no visible binding for global variable ‘PARAM’
  .tpl.adapt.PSMetropolis: no visible binding for global variable
  ‘avg.p.jump’
  .tpl.adapt.PSMetropolis: no visible binding for global variable
  ‘Sigma.scale’
  .tpl.adapt.PSMetropolis: no visible binding for global variable
  ‘old.avg.p.jumps’
  .tpl.adapt.PSMetropolis: no visible binding for global variable
  ‘old.scales’
  .tpl.adapt.PSMetropolis: no visible global function definition for
  ‘ifdebug’
  .tpl.adapt.PSMetropolis: no visible binding for global variable
  ‘QPARAM’
  .tpl.adapt.SMetropolis: no visible binding for global variable
  ‘code.Sigma.scale.specified’
  .tpl.adapt.SMetropolis: no visible binding for '<<-' assignment to
  ‘Sigma.scale’
  .tpl.adapt.SMetropolis: no visible global function definition for
  ‘scaleAdapt’
  .tpl.adapt.SMetropolis: no visible binding for global variable ‘PARAM’
  .tpl.adapt.SMetropolis: no visible binding for global variable
  ‘avg.p.jump’
  .tpl.adapt.SMetropolis: no visible binding for global variable
  ‘Sigma.scale’
  .tpl.adapt.SMetropolis: no visible binding for global variable
  ‘old.avg.p.jumps’
  .tpl.adapt.SMetropolis: no visible binding for global variable
  ‘old.scales’
  .tpl.adaptation.Metropolis: no visible binding for '<<-' assignment to
  ‘jumps’
  .tpl.adaptation.Metropolis: no visible binding for global variable
  ‘jumps’
  .tpl.adaptation.Metropolis: no visible binding for global variable
  ‘PARAM’
  .tpl.adaptation.Metropolis: no visible binding for global variable
  ‘adapt.now’
  .tpl.adaptation.Metropolis: no visible global function definition for
  ‘adapt’
  .tpl.adaptation.PMetropolis: no visible binding for '<<-' assignment to
  ‘jumps’
  .tpl.adaptation.PMetropolis: no visible binding for global variable
  ‘BYCOL’
  .tpl.adaptation.PMetropolis: no visible binding for global variable
  ‘jumps’
  .tpl.adaptation.PMetropolis: no visible binding for global variable
  ‘PARAM’
  .tpl.adaptation.PMetropolis: no visible binding for global variable
  ‘adapt.now’
  .tpl.adaptation.PMetropolis: no visible binding for '<<-' assignment to
  ‘PARAM’
  .tpl.adaptation.PMetropolis: no visible global function definition for
  ‘adapt’
  .tpl.adaptation.PSMetropolis: no visible binding for global variable
  ‘adapt.now’
  .tpl.adaptation.PSMetropolis: no visible global function definition for
  ‘adapt’
  .tpl.adaptation.SMetropolis: no visible binding for global variable
  ‘adapt.now’
  .tpl.adaptation.SMetropolis: no visible global function definition for
  ‘adapt’
  .tpl.altReject.Metropolis: no visible binding for global variable
  ‘PARAM’
  .tpl.altReject.Metropolis: no visible binding for '<<-' assignment to
  ‘PARAM’
  .tpl.altReject.Metropolis: no visible global function definition for
  ‘proposal’
  .tpl.altReject.Metropolis: no visible global function definition for
  ‘.logpost’
  .tpl.altReject.Metropolis: no visible binding for global variable
  ‘logpost.old’
  .tpl.altReject.Metropolis: no visible binding for '<<-' assignment to
  ‘logpost.old’
  .tpl.end.sampler.SamplerCheck: no visible binding for global variable
  ‘errors’
  .tpl.fun.make.chainsampler.Sampler: no visible binding for global
  variable ‘tpl.init.local’
  .tpl.fun.make.chainsampler.Sampler: no visible binding for global
  variable ‘tpl.init.initfun’
  .tpl.fun.make.chainsampler.Sampler: no visible binding for global
  variable ‘tpl.init.chain’
  .tpl.fun.make.chainsampler.Sampler : .setenv: no visible binding for
  global variable ‘tpl.set.env’
  .tpl.fun.make.chainsampler.Sampler : .refresh: no visible binding for
  global variable ‘chain’
  .tpl.fun.make.chainsampler.Sampler : .get.col.names: no visible binding
  for global variable ‘tpl.get.names’
  .tpl.fun.make.chainsampler.Sampler : .get.col.names: no visible binding
  for global variable ‘ALL.PARAMS’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘chain’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘tpl.init.param’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘tpl.init.updater’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘ALL.PARAMS’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible global
  function definition for ‘ifdebug’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘tpl.start.chain’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘n.burnin’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘adaptNow’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘n.thin’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘n.trace.interval’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘tpl.update.param’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘save.all’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘last.iteration’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for '<<-' assignment to ‘last.iteration’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘tpl.end.chain’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for global variable ‘.Umacs.timer’
  .tpl.fun.make.chainsampler.Sampler : <anonymous>: no visible binding
  for '<<-' assignment to ‘.Umacs.timer’
  .tpl.get.names.Parameter: no visible binding for global variable
  ‘QSTEM’
  .tpl.init.Sigma.Metropolis: no visible binding for global variable
  ‘code.Sigma.scale.specified’
  .tpl.init.Sigma.Metropolis: no visible binding for global variable
  ‘code.Sigma.scale’
  .tpl.init.Sigma.Metropolis: no visible binding for global variable
  ‘len’
  .tpl.init.Sigma.PMetropolis: no visible binding for global variable
  ‘PARAM’
  .tpl.init.Sigma.PMetropolis: no visible binding for global variable
  ‘BYCOL’
  .tpl.init.Sigma.PMetropolis: no visible binding for global variable
  ‘code.Sigma.scale.specified’
  .tpl.init.Sigma.PMetropolis: no visible binding for global variable
  ‘code.Sigma.scale’
  .tpl.init.Sigma.PSMetropolis: no visible binding for global variable
  ‘code.Sigma.scale.specified’
  .tpl.init.Sigma.PSMetropolis: no visible binding for global variable
  ‘code.Sigma.scale’
  .tpl.init.Sigma.PSMetropolis: no visible binding for global variable
  ‘len’
  .tpl.init.Sigma.SMetropolis: no visible binding for global variable
  ‘code.Sigma.scale.specified’
  .tpl.init.Sigma.SMetropolis: no visible binding for global variable
  ‘code.Sigma.scale’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN: no visible binding for
  global variable ‘exists.code.logpost’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN : .logpost: no visible
  binding for global variable ‘code.logpost’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN : proposal: no visible
  binding for global variable ‘tpl.proposal’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN : adapt: no visible binding
  for global variable ‘tpl.adapt’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN: no visible binding for
  global variable ‘PARAM’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN: no visible binding for
  global variable ‘tpl.init.Sigma’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN : <anonymous>: no visible
  binding for global variable ‘tpl.reject’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN : <anonymous>: no visible
  binding for global variable ‘adapting’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN : <anonymous>: no visible
  binding for global variable ‘this.jump.prob’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN : <anonymous>: no visible
  binding for global variable ‘Sigma.scale’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN : <anonymous>: no visible
  binding for global variable ‘tpl.adaptation’
  .tpl.init.chain.Metropolis : MAKEUPDATEFUN : <anonymous>: no visible
  binding for global variable ‘adapt.now’
  .tpl.init.chain.RawCode: no visible binding for global variable
  ‘code.init.chain’
  .tpl.init.initfun.Data: no visible binding for global variable ‘PARAM’
  .tpl.init.initfun.FData : INITFUN: no visible binding for global
  variable ‘CODEINIT’
  .tpl.init.initfun.FData: no visible binding for '<<-' assignment to
  ‘PARAM’
  .tpl.init.initfun.FData: no visible binding for global variable ‘PARAM’
  .tpl.init.initfun.RawCode : INITFUN: no visible binding for global
  variable ‘code.init.param’
  .tpl.init.initfun.SamplingScheme : INITFUN: no visible binding for
  global variable ‘CODEINIT’
  .tpl.init.local.LocalFunction: no visible binding for global variable
  ‘FUNDEF’
  .tpl.init.local.SamplingScheme: no visible binding for global variable
  ‘IMPUTING’
  .tpl.init.local.SamplingScheme: no visible binding for global variable
  ‘QSTEM’
  .tpl.init.local.SamplingScheme: no visible global function definition
  for ‘ifdebug’
  .tpl.init.param.FData: no visible binding for '<<-' assignment to
  ‘PARAM’
  .tpl.init.param.FData: no visible global function definition for
  ‘INITFUN’
  .tpl.init.param.RawCode: no visible global function definition for
  ‘INITFUN’
  .tpl.init.param.SamplingScheme: no visible binding for '<<-' assignment
  to ‘PARAM’
  .tpl.init.param.SamplingScheme: no visible global function definition
  for ‘INITFUN’
  .tpl.init.param.check.DFunction: no visible binding for '<<-'
  assignment to ‘PARAM’
  .tpl.init.param.check.DFunction: no visible global function definition
  for ‘UPDATEFUN’
  .tpl.init.param.check.Data: no visible global function definition for
  ‘whisper’
  .tpl.init.param.check.Data: no visible binding for global variable
  ‘QPARAM’
  .tpl.init.param.check.Data: no visible binding for global variable
  ‘PARAM’
  .tpl.init.param.check.Data: no visible binding for global variable
  ‘MISSING’
  .tpl.init.param.check.FData: no visible binding for '<<-' assignment to
  ‘.error’
  .tpl.init.param.check.FData: no visible global function definition for
  ‘whisper’
  .tpl.init.param.check.FData: no visible binding for global variable
  ‘QPARAM’
  .tpl.init.param.check.FData: no visible binding for global variable
  ‘IMPUTING’
  .tpl.init.param.check.FData: no visible binding for global variable
  ‘PARAM’
  .tpl.init.param.check.FData: no visible global function definition for
  ‘error’
  .tpl.init.param.check.FData: no visible binding for global variable
  ‘tpl.init.param’
  .tpl.init.param.check.FData: no visible binding for '<<-' assignment to
  ‘PARAM’
  .tpl.init.param.check.FData: no visible global function definition for
  ‘.check.param.value’
  .tpl.init.param.check.FData: no visible binding for '<<-' assignment to
  ‘errors’
  .tpl.init.param.check.FData: no visible binding for global variable
  ‘errors’
  .tpl.init.param.check.FData: no visible binding for global variable
  ‘.error’
  .tpl.init.param.check.LocalFunction: no visible global function
  definition for ‘whisper’
  .tpl.init.param.check.LocalFunction: no visible binding for global
  variable ‘QPARAM’
  .tpl.init.param.check.LocalObject: no visible global function
  definition for ‘whisper’
  .tpl.init.param.check.LocalObject: no visible binding for global
  variable ‘QPARAM’
  .tpl.init.param.check.LocalObject: no visible binding for global
  variable ‘PARAM’
  .tpl.init.param.check.SamplingScheme: no visible binding for '<<-'
  assignment to ‘.error’
  .tpl.init.param.check.SamplingScheme: no visible global function
  definition for ‘whisper’
  .tpl.init.param.check.SamplingScheme: no visible binding for global
  variable ‘QPARAM’
  .tpl.init.param.check.SamplingScheme: no visible binding for global
  variable ‘IMPUTING’
  .tpl.init.param.check.SamplingScheme: no visible binding for global
  variable ‘PARAM’
  .tpl.init.param.check.SamplingScheme: no visible global function
  definition for ‘error’
  .tpl.init.param.check.SamplingScheme: no visible binding for global
  variable ‘tpl.init.param’
  .tpl.init.param.check.SamplingScheme: no visible binding for '<<-'
  assignment to ‘PARAM’
  .tpl.init.param.check.SamplingScheme: no visible global function
  definition for ‘.check.param.value’
  .tpl.init.param.check.SamplingScheme: no visible binding for '<<-'
  assignment to ‘errors’
  .tpl.init.param.check.SamplingScheme: no visible binding for global
  variable ‘errors’
  .tpl.init.param.check.SamplingScheme: no visible binding for global
  variable ‘.error’
  .tpl.init.sampler.RawCode: no visible binding for global variable
  ‘code.init.sampler’
  .tpl.init.sampler.SamplerCheck : .check.param.value: no visible global
  function definition for ‘error’
  .tpl.init.trace.Trace: no visible binding for global variable
  ‘QTRACEPARAM’
  .tpl.init.trace.Trace: no visible binding for global variable ‘n.iter’
  .tpl.init.trace.Trace: no visible binding for global variable ‘silent’
  .tpl.init.updater.DFunction: no visible binding for '<<-' assignment to
  ‘UPDATEFUN’
  .tpl.init.updater.DFunction : <anonymous>: no visible binding for
  global variable ‘CODEUPDATE’
  .tpl.init.updater.Gibbs: no visible binding for '<<-' assignment to
  ‘UPDATEFUN’
  .tpl.init.updater.Gibbs : <anonymous>: no visible binding for global
  variable ‘CODEUPDATE’
  .tpl.init.updater.Metropolis: no visible binding for '<<-' assignment
  to ‘UPDATEFUN’
  .tpl.init.updater.Metropolis: no visible global function definition for
  ‘MAKEUPDATEFUN’
  .tpl.proposal.Gaussian.Metropolis: no visible binding for global
  variable ‘PARAM’
  .tpl.proposal.Gaussian.Metropolis: no visible binding for global
  variable ‘Sigma.jump.eigen’
  .tpl.proposal.Gaussian.SMetropolis: no visible binding for global
  variable ‘PARAM’
  .tpl.proposal.Gaussian.SMetropolis: no visible binding for global
  variable ‘Sigma.scale’
  .tpl.proposal.PMetropolis: no visible binding for global variable
  ‘PARAM’
  .tpl.proposal.PMetropolis: no visible binding for global variable
  ‘Sigma.jump.eigen’
  .tpl.proposal.PMetropolis: no visible binding for global variable
  ‘BYCOL’
  .tpl.proposal.PSMetropolis: no visible binding for global variable
  ‘PARAM’
  .tpl.proposal.PSMetropolis: no visible binding for global variable
  ‘Sigma.scale’
  .tpl.proposal.normal.PMetropolis: no visible binding for global
  variable ‘PARAM’
  .tpl.proposal.normal.PMetropolis: no visible binding for global
  variable ‘Sigma.jump.eigen’
  .tpl.proposal.normal.PMetropolis: no visible binding for global
  variable ‘BYCOL’
  .tpl.reject.Metropolis: no visible global function definition for
  ‘.logpost’
  .tpl.reject.Metropolis: no visible binding for global variable ‘PARAM’
  .tpl.reject.Metropolis: no visible binding for '<<-' assignment to
  ‘PARAM’
  .tpl.reject.Metropolis: no visible global function definition for
  ‘proposal’
  .tpl.reject.Metropolis: no visible global function definition for
  ‘error’
  .tpl.reject.Metropolis: no visible binding for global variable ‘QPARAM’
  .tpl.reject.PMetropolis: no visible global function definition for
  ‘.logpost’
  .tpl.reject.PMetropolis: no visible binding for global variable ‘PARAM’
  .tpl.reject.PMetropolis: no visible binding for '<<-' assignment to
  ‘PARAM’
  .tpl.reject.PMetropolis: no visible global function definition for
  ‘proposal’
  .tpl.reject.PMetropolis: no visible binding for global variable ‘len’
  .tpl.reject.PSMetropolis: no visible global function definition for
  ‘.logpost’
  .tpl.reject.PSMetropolis: no visible binding for global variable
  ‘PARAM’
  .tpl.reject.PSMetropolis: no visible binding for '<<-' assignment to
  ‘PARAM’
  .tpl.reject.PSMetropolis: no visible global function definition for
  ‘proposal’
  .tpl.reject.PSMetropolis: no visible global function definition for
  ‘error’
  .tpl.reject.PSMetropolis: no visible binding for global variable
  ‘QPARAM’
  .tpl.reject.PSMetropolis: no visible binding for global variable ‘len’
  .tpl.set.env.SamplingScheme: no visible binding for global variable
  ‘Umacs’
  .tpl.set.env.SamplingScheme: no visible binding for global variable
  ‘chain’
  .tpl.set.env.SamplingScheme: no visible binding for '<<-' assignment to
  ‘Umacs’
  .tpl.start.chain.Trace: no visible binding for global variable
  ‘INITFUN’
  .tpl.start.chain.Trace: no visible binding for '<<-' assignment to
  ‘INITFUN’
  .tpl.start.chain.Trace: no visible global function definition for
  ‘UPDATEFUN’
  .tpl.start.chain.Trace: no visible binding for global variable ‘n.iter’
  .tpl.update.param.DFunction: no visible binding for '<<-' assignment to
  ‘PARAM’
  .tpl.update.param.DFunction: no visible global function definition for
  ‘UPDATEFUN’
  .tpl.update.param.Gibbs: no visible binding for '<<-' assignment to
  ‘PARAM’
  .tpl.update.param.Gibbs: no visible global function definition for
  ‘UPDATEFUN’
  .tpl.update.param.Metropolis: no visible global function definition for
  ‘UPDATEFUN’
  .tpl.update.param.RawCode: no visible binding for global variable
  ‘code.update’
  .tpl.update.param.Trace: no visible binding for global variable
  ‘INITFUN’
  .tpl.update.param.Trace: no visible binding for '<<-' assignment to
  ‘INITFUN’
  .tpl.update.param.Trace: no visible global function definition for
  ‘UPDATEFUN’
  .tpl.update.param.Trace: no visible binding for global variable
  ‘TRACEPARAM’
  .tpl.update.param.Trace: no visible binding for global variable ‘chain’
  .tpl.update.param.check.DFunction: no visible binding for '<<-'
  assignment to ‘verbose’
  .tpl.update.param.check.DFunction: no visible binding for '<<-'
  assignment to ‘.error’
  .tpl.update.param.check.DFunction: no visible global function
  definition for ‘whisper’
  .tpl.update.param.check.DFunction: no visible binding for global
  variable ‘QPARAM’
  .tpl.update.param.check.DFunction: no visible binding for global
  variable ‘tpl.update.param’
  .tpl.update.param.check.DFunction: no visible global function
  definition for ‘error’
  .tpl.update.param.check.DFunction: no visible binding for '<<-'
  assignment to ‘PARAM’
  .tpl.update.param.check.DFunction: no visible binding for '<<-'
  assignment to ‘errors’
  .tpl.update.param.check.DFunction: no visible binding for global
  variable ‘errors’
  .tpl.update.param.check.DFunction: no visible binding for global
  variable ‘.error’
  .tpl.update.param.check.SamplingScheme: no visible binding for '<<-'
  assignment to ‘verbose’
  .tpl.update.param.check.SamplingScheme: no visible binding for '<<-'
  assignment to ‘.error’
  .tpl.update.param.check.SamplingScheme: no visible binding for global
  variable ‘PARAM’
  .tpl.update.param.check.SamplingScheme: no visible global function
  definition for ‘whisper’
  .tpl.update.param.check.SamplingScheme: no visible binding for global
  variable ‘QPARAM’
  .tpl.update.param.check.SamplingScheme: no visible binding for global
  variable ‘tpl.update.param’
  .tpl.update.param.check.SamplingScheme: no visible global function
  definition for ‘error’
  .tpl.update.param.check.SamplingScheme: no visible binding for '<<-'
  assignment to ‘PARAM’
  .tpl.update.param.check.SamplingScheme: no visible global function
  definition for ‘.check.param.value’
  .tpl.update.param.check.SamplingScheme: no visible binding for global
  variable ‘.error’
  .tpl.update.param.check.SamplingScheme: no visible binding for '<<-'
  assignment to ‘errors’
  .tpl.update.param.check.SamplingScheme: no visible binding for global
  variable ‘errors’
  .tpl.update.param.timer.SamplingScheme: no visible binding for global
  variable ‘tpl.update.param’
  .tpl.update.param.timer.SamplingScheme: no visible binding for '<<-'
  assignment to ‘.Umacs.timer.local’
  .tpl.update.param.timer.SamplingScheme: no visible binding for global
  variable ‘.Umacs.timer.local’
  Data: no visible global function definition for ‘error’
  Sampler.example : <anonymous>: no visible binding for global variable
  ‘theta’
  SamplerCheck: no visible binding for '<<-' assignment to ‘.sc’
  monitor.mcts: no visible global function definition for ‘.monitor’
• checking Rd files ... WARNING
  prepare_Rd: DFunction-class.Rd:10: Dropping empty section ‘Objects from the Class’
  prepare_Rd: DFunction-class.Rd:29: Dropping empty section ‘Extends’
  prepare_Rd: DFunction-class.Rd:30-33: Dropping empty section ‘Methods’
  prepare_Rd: DFunction-class.Rd:36: Dropping empty section \note
  prepare_Rd: DFunction-class.Rd:45: Dropping empty section \examples
  prepare_Rd: DFunction.Rd:64: Dropping empty section \examples
  prepare_Rd: Data-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: Data-class.Rd:28: Dropping empty section ‘Extends’
  prepare_Rd: Data-class.Rd:29-32: Dropping empty section ‘Methods’
  prepare_Rd: Data-class.Rd:35: Dropping empty section \note
  prepare_Rd: Data-class.Rd:44: Dropping empty section \examples
  prepare_Rd: Data.Rd:50: Dropping empty section \examples
  prepare_Rd: Gibbs-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: Gibbs-class.Rd:26: Dropping empty section ‘Extends’
  prepare_Rd: Gibbs-class.Rd:27-30: Dropping empty section ‘Methods’
  prepare_Rd: Gibbs-class.Rd:33: Dropping empty section \note
  prepare_Rd: Gibbs-class.Rd:42: Dropping empty section \examples
  prepare_Rd: Gibbs.Rd:40: Dropping empty section \note
  prepare_Rd: Gibbs.Rd:42: Dropping empty section \examples
  prepare_Rd: LocalFunction-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: LocalFunction-class.Rd:27: Dropping empty section ‘Extends’
  prepare_Rd: LocalFunction-class.Rd:28-31: Dropping empty section ‘Methods’
  prepare_Rd: LocalFunction-class.Rd:34: Dropping empty section \note
  prepare_Rd: LocalFunction-class.Rd:43: Dropping empty section \examples
  prepare_Rd: LocalFunction.Rd:51: Dropping empty section \examples
  prepare_Rd: LocalObject-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: LocalObject-class.Rd:27: Dropping empty section ‘Extends’
  prepare_Rd: LocalObject-class.Rd:28-31: Dropping empty section ‘Methods’
  prepare_Rd: LocalObject-class.Rd:34: Dropping empty section \note
  prepare_Rd: LocalObject-class.Rd:43: Dropping empty section \examples
  prepare_Rd: LocalObject.Rd:55: Dropping empty section \examples
  prepare_Rd: Metropolis-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: Metropolis-class.Rd:26: Dropping empty section ‘Extends’
  prepare_Rd: Metropolis-class.Rd:27-30: Dropping empty section ‘Methods’
  prepare_Rd: Metropolis-class.Rd:33: Dropping empty section \note
  prepare_Rd: Metropolis-class.Rd:42: Dropping empty section \examples
  prepare_Rd: Metropolis.Rd:56: Dropping empty section \examples
  prepare_Rd: PMetropolis-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: PMetropolis-class.Rd:27: Dropping empty section ‘Extends’
  prepare_Rd: PMetropolis-class.Rd:28-31: Dropping empty section ‘Methods’
  prepare_Rd: PMetropolis-class.Rd:34: Dropping empty section \note
  prepare_Rd: PMetropolis-class.Rd:43: Dropping empty section \examples
  prepare_Rd: PMetropolis.Rd:66: Dropping empty section \note
  prepare_Rd: PMetropolis.Rd:75: Dropping empty section \examples
  prepare_Rd: PSMetropolis-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: PSMetropolis-class.Rd:26: Dropping empty section ‘Extends’
  prepare_Rd: PSMetropolis-class.Rd:27-30: Dropping empty section ‘Methods’
  prepare_Rd: PSMetropolis-class.Rd:33: Dropping empty section \note
  prepare_Rd: PSMetropolis-class.Rd:42: Dropping empty section \examples
  prepare_Rd: PSMetropolis.Rd:67: Dropping empty section \note
  prepare_Rd: PSMetropolis.Rd:76: Dropping empty section \examples
  prepare_Rd: Parameter-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: Parameter-class.Rd:26: Dropping empty section ‘Extends’
  prepare_Rd: Parameter-class.Rd:27-30: Dropping empty section ‘Methods’
  prepare_Rd: Parameter-class.Rd:33: Dropping empty section \note
  prepare_Rd: Parameter-class.Rd:42: Dropping empty section \examples
  prepare_Rd: ParameterList-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: ParameterList-class.Rd:15: Dropping empty section ‘Extends’
  prepare_Rd: ParameterList-class.Rd:16-19: Dropping empty section ‘Methods’
  prepare_Rd: ParameterList-class.Rd:22: Dropping empty section \note
  prepare_Rd: ParameterList-class.Rd:31: Dropping empty section \examples
  prepare_Rd: RawCode-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: RawCode-class.Rd:26: Dropping empty section ‘Extends’
  prepare_Rd: RawCode-class.Rd:27-30: Dropping empty section ‘Methods’
  prepare_Rd: RawCode-class.Rd:33: Dropping empty section \note
  prepare_Rd: RawCode-class.Rd:42: Dropping empty section \examples
  prepare_Rd: RawCode.Rd:52: Dropping empty section \examples
  prepare_Rd: SMetropolis-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: SMetropolis-class.Rd:26: Dropping empty section ‘Extends’
  prepare_Rd: SMetropolis-class.Rd:27-30: Dropping empty section ‘Methods’
  prepare_Rd: SMetropolis-class.Rd:33: Dropping empty section \note
  prepare_Rd: SMetropolis-class.Rd:42: Dropping empty section \examples
  prepare_Rd: SMetropolis.Rd:48: Dropping empty section \note
  prepare_Rd: SMetropolis.Rd:57: Dropping empty section \examples
  prepare_Rd: Sampler-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: Sampler-class.Rd:16: Dropping empty section ‘Extends’
  prepare_Rd: Sampler-class.Rd:17-20: Dropping empty section ‘Methods’
  prepare_Rd: Sampler-class.Rd:23: Dropping empty section \note
  prepare_Rd: Sampler-class.Rd:32: Dropping empty section \examples
  prepare_Rd: Sampler.Rd:84: Dropping empty section \note
  prepare_Rd: Sampler.Rd:93: Dropping empty section \examples
  prepare_Rd: SamplerCheck-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: SamplerCheck-class.Rd:16: Dropping empty section ‘Extends’
  prepare_Rd: SamplerCheck-class.Rd:17-20: Dropping empty section ‘Methods’
  prepare_Rd: SamplerCheck-class.Rd:23: Dropping empty section \note
  prepare_Rd: SamplerCheck-class.Rd:32: Dropping empty section \examples
  prepare_Rd: SamplingScheme-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: SamplingScheme-class.Rd:26: Dropping empty section ‘Extends’
  prepare_Rd: SamplingScheme-class.Rd:27-30: Dropping empty section ‘Methods’
  prepare_Rd: SamplingScheme-class.Rd:42: Dropping empty section \examples
  prepare_Rd: Trace-class.Rd:7: Dropping empty section ‘Objects from the Class’
  prepare_Rd: Trace-class.Rd:26: Dropping empty section ‘Extends’
  prepare_Rd: Trace-class.Rd:27-30: Dropping empty section ‘Methods’
  prepare_Rd: Trace-class.Rd:33: Dropping empty section \note
  prepare_Rd: Trace-class.Rd:42: Dropping empty section \examples
  prepare_Rd: Trace.Rd:33: Dropping empty section \note
  prepare_Rd: Trace.Rd:42: Dropping empty section \examples
  prepare_Rd: Umacs-package.Rd:7: unknown macro '\crVersion'
  prepare_Rd: Umacs-package.Rd:7: unknown macro '\crDate'
  prepare_Rd: Umacs-package.Rd:7: unknown macro '\crNamespace'
  prepare_Rd: Umacs-package.Rd:7: unknown macro '\crEnhances'
  prepare_Rd: Umacs-package.Rd:7: unknown macro '\crDepends'
  prepare_Rd: Umacs-package.Rd:7: unknown macro '\crLicense'
  checkRd: (7) Umacs-package.Rd:7: Only 2 columns allowed in this table
  prepare_Rd: as.bugs.mcts.Rd:23: Dropping empty section \examples
  prepare_Rd: as.rv.mcts.Rd:28: Dropping empty section \examples
  prepare_Rd: codetemplate-class.Rd:13: Dropping empty section ‘Objects from the Class’
  prepare_Rd: codetemplate-class.Rd:19: Dropping empty section ‘Extends’
  prepare_Rd: codetemplate-class.Rd:20-23: Dropping empty section ‘Methods’
  prepare_Rd: codetemplate-class.Rd:26: Dropping empty section \note
  prepare_Rd: codetemplate-class.Rd:35: Dropping empty section \examples
  prepare_Rd: codetemplatelist-class.Rd:12: Dropping empty section ‘Objects from the Class’
  prepare_Rd: codetemplatelist-class.Rd:18: Dropping empty section ‘Extends’
  prepare_Rd: codetemplatelist-class.Rd:19-22: Dropping empty section ‘Methods’
  prepare_Rd: codetemplatelist-class.Rd:25: Dropping empty section \note
  prepare_Rd: codetemplatelist-class.Rd:34: Dropping empty section \examples
  prepare_Rd: mcts-class.Rd:23: Dropping empty section ‘Extends’
  prepare_Rd: mcts-class.Rd:24-27: Dropping empty section ‘Methods’
  prepare_Rd: mcts-class.Rd:42: Dropping empty section \examples
  prepare_Rd: mcts.Rd:28: Dropping empty section \details
  prepare_Rd: mcts.Rd:32: Dropping empty section \note
  prepare_Rd: mcts.Rd:41: Dropping empty section \examples
  prepare_Rd: snippet-class.Rd:39: Dropping empty section \details
  prepare_Rd: snippet-class.Rd:12: Dropping empty section ‘Objects from the Class’
  prepare_Rd: snippet-class.Rd:21: Dropping empty section ‘Extends’
  prepare_Rd: snippet-class.Rd:22-25: Dropping empty section ‘Methods’
  prepare_Rd: snippet-class.Rd:28: Dropping empty section \note
  prepare_Rd: snippet-class.Rd:37: Dropping empty section \examples
  prepare_Rd: snippetlist-class.Rd:35: Dropping empty section \details
  prepare_Rd: snippetlist-class.Rd:11: Dropping empty section ‘Objects from the Class’
  prepare_Rd: snippetlist-class.Rd:17: Dropping empty section ‘Extends’
  prepare_Rd: snippetlist-class.Rd:18-21: Dropping empty section ‘Methods’
  prepare_Rd: snippetlist-class.Rd:24: Dropping empty section \note
  prepare_Rd: snippetlist-class.Rd:33: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking examples ... NONE
• checking package vignettes in 'inst/doc' ... OK
• checking PDF version of manual ... WARNING
  LaTeX errors when creating PDF version.
  This typically indicates Rd problems.
  LaTeX errors found:
  ! Extra alignment tab has been changed to \cr.
  <recently read> \endtemplate
  
  l.38 ...{}crLicense: & GPL version 2 or newer\\{}}
  
  ! Extra alignment tab has been changed to \cr.
  <recently read> \endtemplate
  
  l.38 ...{}crLicense: & GPL version 2 or newer\\{}}
  
  ! Extra alignment tab has been changed to \cr.
  <recently read> \endtemplate
  
  l.38 ...{}crLicense: & GPL version 2 or newer\\{}}
  
• checking PDF version of manual without index ... ERROR