• using R Under development (unstable) (2012-02-06 r58287)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘RSiena/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘RSiena’ version ‘1.0.12.198’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘RSiena’ can be installed ... OK
• checking installed package size ... NOTE
  installed size is 7.3Mb
  sub-directories of 1Mb or more:
  libs 5.4Mb
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [34s/34s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [16s/16s] OK
  Running ‘parallel.R’ [15s/15s]
  Comparing ‘parallel.Rout’ to ‘parallel.Rout.save’ ... OK
  Running ‘scripts.R’ [0s/0s]
  Comparing ‘scripts.Rout’ to ‘scripts.Rout.save’ ...5a6,104
  > >
  > > runone <- function(f)
  > + {
  > + message(" Running ", sQuote(basename(f)))
  > + outfile <- paste(basename(f), "out", sep = "")
  > + failfile <- paste(outfile, "fail", sep=".")
  > + unlink(c(outfile, failfile))
  > + cmd <- paste(shQuote(file.path(R.home(), "bin", "R")),
  > + "CMD BATCH --vanilla",
  > + shQuote(f), shQuote(outfile))
  > + res <- system(cmd)
  > + if (res) {
  > + cat(tail(readLines(outfile), 20), sep="\n")
  > + file.rename(outfile, failfile)
  > + return(1L)
  > + }
  > + 0L
  > + }
  > >
  > >
  > > ##library(RSienaTest)
  > > ## get the data files
  > > datafiles <- system.file("examples", package="RSiena")
  > > files1 <- list.files(datafiles, pattern="\\.dat$", full.names=TRUE)
  > > file.copy(files1, ".", overwrite=TRUE)
  > [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  > [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  > [31] TRUE TRUE
  > > files1 <- list.files(datafiles, pattern="\\.DAT$", full.names=TRUE)
  > > file.copy(files1, ".", overwrite=TRUE)
  > [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  > [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
  > >
  > > ## write some initialisation data
  > > unlink("scriptfile.R")
  > > writeLines(c("options(error=NULL)", "set.seed(1)",
  > + "options(help_type='text')", "#print(.libPaths())"), "scriptfile.R")
  > > if (.Platform$OS.type == "windows")
  > + {
  > + cat("options(pager='console')\n", file="scriptfile.R", append=TRUE)
  > + }
  > > ## now concatenate the scripts
  > > dd <- system.file("scripts", package="RSiena")
  > > files <- list.files(dd, pattern="\\.R$", full.names=TRUE)
  > > for (f in files)
  > + {
  > + if (!grepl("SNA", f))
  > + {
  > + file.append("scriptfile.R", f)
  > + }
  > + }
  > >
  > > ## now run it
  > > res <- 0L
  > > runone("scriptfile.R")
  > Running 'scriptfile.R'
  > [1] 0
  > >
  > > ## now look at the differences
  > > ## code within extra braces because we execute it in batch mode
  > > {if (.Platform$OS.type == "windows")
  > + {
  > + previousFile <- "scriptfile.Rout.win"
  > + }
  > + else
  > + {
  > + previousFile <- "scriptfile.Rout.save"
  > + }}
  > > #system("diff scriptfile.Rout scriptfile.Rout.save")
  > > library(tools)
  > > Rdiff("scriptfile.Rout", previousFile)
  >
  > 490c490
  > < Packaged: 2012-01-20 15:00:55 UTC; ruth
  > ---
  > > Packaged: 2012-01-20 14:53:50 UTC; ruth
  > 492c492
  > < 15:01:02 UTC; unix
  > ---
  > > 14:54:06 UTC; unix
  > 2686c2686
  > < % Fri Jan 20 15:04:14 2012
  > ---
  > > % Fri Jan 20 14:57:23 2012
  > 2714c2714
  > < <!-- Fri Jan 20 15:04:14 2012 -->
  > ---
  > > <!-- Fri Jan 20 14:57:23 2012 -->
  > [1] 1
  > >
  > > proc.time()
  > user system elapsed
  > 86.492 0.276 88.932
  > >
  > > if (res > 0)
  > + {
  > + stop("scripts failed")
  > + }
  > >
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/RSiena.Rcheck/00check.log’
  for details.