• using R version 2.10.0 Under development (unstable) (2009-07-02 r48890)
• using session charset: UTF-8
• checking for file 'PHYLOGR/DESCRIPTION' ... OK
• this is package 'PHYLOGR' version '1.0.6'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'PHYLOGR' can be installed ... WARNING
  Found the following significant warnings:
  Warning: unmatched right brace in file 'Lacertid.IC.Rd' on line 22
  Warning: unmatched right brace in file 'Lacertid.Original.Rd' on line 28
  Warning: unmatched right brace in file 'Lacertid.varcov.Rd' on line 20
  Warning: unmatched right brace in file 'SimulExample.Rd' on line 10
  Warning: unmatched right brace in file 'SimulExample.Rd' on line 34
  Warning: invalid whitespace before brace in file 'print.summary.phylog.Rd' at '\item{x} { an object of the appropriate class.}'
  Warning: invalid whitespace before brace in file 'summary.phylog.cancor.Rd' at ' \item{original.LR.statistic} {the likelihood ratio statistic for the test that all canonical correlations are zero}'
  Warning: invalid whitespace before brace in file 'summary.phylog.cancor.Rd' at ' \item{p.value.overall.test} {the p-value for the test that all canonical correlations are zero}'
  See http://www.r-project.org/nosvn/R.check/r-devel-linux-ix86/PHYLOGR-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... NOTE
  Non-standard license specification:
  GPL version 2 or newer
  Standardizable: TRUE
  Standardized license specification:
  GPL (>= 2)
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  lm.phylog: no visible binding for global variable ‘sim.counter’
• checking Rd files ... OK
• checking Rd files against version 2 parser ... WARNING
  Warning in parse_Rd("./man/Lacertid.IC.Rd", encoding = "unknown") :
  ./man/Lacertid.IC.Rd:22: unexpected '}'
  Warning in parse_Rd("./man/Lacertid.Original.Rd", encoding = "unknown") :
  ./man/Lacertid.Original.Rd:28: unexpected '}'
  Warning in parse_Rd("./man/Lacertid.varcov.Rd", encoding = "unknown") :
  ./man/Lacertid.varcov.Rd:20: unexpected '}'
  Warning in parse_Rd("./man/SimulExample.Rd", encoding = "unknown") :
  ./man/SimulExample.Rd:10: unexpected '}'
  Warning in parse_Rd("./man/SimulExample.Rd", encoding = "unknown") :
  ./man/SimulExample.Rd:34: unexpected '}'
  Warning in parse_Rd("./man/print.summary.phylog.Rd", encoding = "unknown") :
  bad markup (extra space?) at print.summary.phylog.Rd:19:11
  Warning: ./man/print.summary.phylog.Rd:19: Unnecessary braces at ‘{ an object of the appropriate class.}’
  Warning in parse_Rd("./man/summary.phylog.cancor.Rd", encoding = "unknown") :
  bad markup (extra space?) at summary.phylog.cancor.Rd:58:31
  Warning in parse_Rd("./man/summary.phylog.cancor.Rd", encoding = "unknown") :
  bad markup (extra space?) at summary.phylog.cancor.Rd:62:30
  Warning: ./man/summary.phylog.cancor.Rd:58-59: Unnecessary braces at ‘{the likelihood ratio statistic for the
  test that all canonical correlations are zero}’
  Warning: ./man/summary.phylog.cancor.Rd:62-63: Unnecessary braces at ‘{the p-value for the test that all
  canonical correlations are zero}’
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking examples ... OK
• checking PDF version of manual ... OK