- using R Under development (unstable) (2012-02-06 r58287)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘HH/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘HH’ version ‘2.2-23’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘HH’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
F.observed: warning in axis(side = 1, at = f.obs, label = FALSE, col =
col): partial argument match of 'label' to 'labels'
F.observed: warning in axis(side = 3, at = f.obs, label = FALSE, col =
col): partial argument match of 'label' to 'labels'
arima.diag.hh: possible error in eval(parse(text = series.name), local
= sys.parent()): unused argument(s) (local = sys.parent())
as.data.frame.listOfNamedMatrices: no visible global function
definition for ‘doItAndPrint’
chisq.observed: warning in axis(side = 1, at = chisq.obs, label =
FALSE, col = col): partial argument match of 'label' to 'labels'
chisq.observed: warning in axis(side = 3, at = chisq.obs, label =
FALSE, col = col): partial argument match of 'label' to 'labels'
ci.plot.lm: possible error in get(my.data.name, frame = 0): unused
argument(s) (frame = 0)
ci.plot.lm: possible error in get(my.data.name, frame = sys.parent()):
unused argument(s) (frame = sys.parent())
ci.plot.lm: possible error in assign(my.data.name, my.data, frame = 0):
unused argument(s) (frame = 0)
ci.plot.lm: possible error in assign(my.data.name, old.contents, frame
= 0): unused argument(s) (frame = 0)
cp.calc: possible error in var(data[[y.name]], SumSquares = TRUE):
unused argument(s) (SumSquares = TRUE)
glht.mmc.lm: no visible binding for global variable ‘none.glht’
hov: possible error in eval(dft$expr[[1]], local = data): unused
argument(s) (local = data)
hov: possible error in eval(dft$expr[[2]], local = data): unused
argument(s) (local = data)
interaction2wt.formula: possible error in eval(dft$expr[[1]], local =
data): unused argument(s) (local = data)
intxplot: warning in sufficient(data, y = y.name, c(x.factor.name,
trace.factor.name)): partial argument match of 'y' to 'yname'
multicomp.mmc: possible error in get(my.data.name, frame = 0): unused
argument(s) (frame = 0)
multicomp.mmc: possible error in get(my.data.name, frame =
sys.parent()): unused argument(s) (frame = sys.parent())
multicomp.mmc: possible error in assign(my.data.name, my.data, frame =
0): unused argument(s) (frame = 0)
multicomp.mmc: possible error in assign(my.data.name, old.contents,
frame = 0): unused argument(s) (frame = 0)
norm.observed: warning in axis(side = 1, at = xbar, label = FALSE, col
= col): partial argument match of 'label' to 'labels'
norm.observed: warning in axis(side = 3, at = xbar, label = FALSE, col
= col): partial argument match of 'label' to 'labels'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, xlim = c(xmin,
xmax), ylim = c(gxbar.min, gxbar.max), main = standard.normal.main):
partial argument match of 'xlim' to 'xlim.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, xlim = c(xmin,
xmax), ylim = c(gxbar.min, gxbar.max), main = standard.normal.main):
partial argument match of 'ylim' to 'ylim.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, xlim = c(xmin,
xmax), ylim = c(gxbar.min, gxbar.max), main = standard.normal.main):
partial argument match of 'main' to 'main.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, xlim = c(xmin,
xmax), ylim = c(gxbar.min, gxbar.max), main = normal.main, se = se, n
= n.conf): partial argument match of 'xlim' to 'xlim.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, xlim = c(xmin,
xmax), ylim = c(gxbar.min, gxbar.max), main = normal.main, se = se, n
= n.conf): partial argument match of 'ylim' to 'ylim.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, xlim = c(xmin,
xmax), ylim = c(gxbar.min, gxbar.max), main = normal.main, se = se, n
= n.conf): partial argument match of 'main' to 'main.in'
normal.and.t.dist: warning in norm.setup(mean = obs.mean, xlim =
c(xmin, xmax), ylim = c(gxbar.min, gxbar.max), sd = sd, se = se, n =
n.conf, main = normal.conf.main): partial argument match of 'xlim' to
'xlim.in'
normal.and.t.dist: warning in norm.setup(mean = obs.mean, xlim =
c(xmin, xmax), ylim = c(gxbar.min, gxbar.max), sd = sd, se = se, n =
n.conf, main = normal.conf.main): partial argument match of 'ylim' to
'ylim.in'
normal.and.t.dist: warning in norm.setup(mean = obs.mean, xlim =
c(xmin, xmax), ylim = c(gxbar.min, gxbar.max), sd = sd, se = se, n =
n.conf, main = normal.conf.main): partial argument match of 'main' to
'main.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, df.t = deg.free,
xlim = c(xmin, xmax), ylim = c(gxbar.min, gxbar.max), main =
standard.t.main): partial argument match of 'xlim' to 'xlim.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, df.t = deg.free,
xlim = c(xmin, xmax), ylim = c(gxbar.min, gxbar.max), main =
standard.t.main): partial argument match of 'ylim' to 'ylim.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, df.t = deg.free,
xlim = c(xmin, xmax), ylim = c(gxbar.min, gxbar.max), main =
standard.t.main): partial argument match of 'main' to 'main.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, n = n.conf, se =
se, df.t = deg.free, xlim = c(xmin, xmax), ylim = c(gxbar.min,
gxbar.max), main = t.dist.main): partial argument match of 'xlim' to
'xlim.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, n = n.conf, se =
se, df.t = deg.free, xlim = c(xmin, xmax), ylim = c(gxbar.min,
gxbar.max), main = t.dist.main): partial argument match of 'ylim' to
'ylim.in'
normal.and.t.dist: warning in norm.setup(mean = mu.H0, n = n.conf, se =
se, df.t = deg.free, xlim = c(xmin, xmax), ylim = c(gxbar.min,
gxbar.max), main = t.dist.main): partial argument match of 'main' to
'main.in'
normal.and.t.dist: warning in norm.setup(mean = obs.mean, n = n.conf,
se = se, df.t = deg.free, xlim = c(xmin, xmax), ylim = c(gxbar.min,
gxbar.max), main = t.conf.main): partial argument match of 'xlim' to
'xlim.in'
normal.and.t.dist: warning in norm.setup(mean = obs.mean, n = n.conf,
se = se, df.t = deg.free, xlim = c(xmin, xmax), ylim = c(gxbar.min,
gxbar.max), main = t.conf.main): partial argument match of 'ylim' to
'ylim.in'
normal.and.t.dist: warning in norm.setup(mean = obs.mean, n = n.conf,
se = se, df.t = deg.free, xlim = c(xmin, xmax), ylim = c(gxbar.min,
gxbar.max), main = t.conf.main): partial argument match of 'main' to
'main.in'
normal.and.t.dist: warning in norm.curve(crit = cv, mean = mu.H1, col =
col.beta, shade = cv.altshade, axis.name = if (is.null(deg.free))
"z1" else "t1", axis.name.expr = t.or.z.expr, Use.obs.mean =
Use.obs.mean, col.label = col.beta.label, polygon.density =
polygon.density, polygon.lwd = polygon.lwd): partial argument match
of 'crit' to 'critical.values'
normal.and.t.dist: warning in norm.curve(crit = cv, se = se, df.t =
deg.free, mean = mu.H1, col = col.beta, shade = cv.altshade,
axis.name = if (is.null(deg.free)) "z1" else "t1", axis.name.expr =
t.or.z.expr, Use.obs.mean = Use.obs.mean, col.label = col.beta.label,
polygon.density = polygon.density, polygon.lwd = polygon.lwd):
partial argument match of 'crit' to 'critical.values'
normal.and.t.dist: warning in norm.curve(crit = cv, mean = mu.H0, col =
col.alpha, shade = cv.shade, Use.obs.mean = Use.obs.mean, col.label =
col.alpha.label, polygon.density = polygon.density, polygon.lwd =
polygon.lwd): partial argument match of 'crit' to 'critical.values'
normal.and.t.dist: warning in norm.curve(crit = cv, df.t = deg.free,
mean = mu.H0, col = col.alpha, shade = cv.shade, Use.obs.mean =
Use.obs.mean, col.label = col.alpha.label, polygon.density =
polygon.density, polygon.lwd = polygon.lwd): partial argument match
of 'crit' to 'critical.values'
normal.and.t.dist: warning in norm.curve(crit = cv, se = se, df.t =
deg.free, mean = mu.H0, col = col.alpha, shade = cv.shade,
Use.obs.mean = Use.obs.mean, col.label = col.alpha.label,
polygon.density = polygon.density, polygon.lwd = polygon.lwd):
partial argument match of 'crit' to 'critical.values'
normal.and.t.dist: warning in norm.curve(crit = cv, se = se, df.t =
deg.free, mean = obs.mean, col = col.conf, shade = cv.altshade,
Use.obs.mean = Use.obs.mean, col.label = col.alpha.label,
hypoth.or.conf = "Conf", col.conf.arrow = col.conf.arrow,
col.conf.label = col.conf.label, cex.crit = cex.crit, polygon.density
= polygon.density, polygon.lwd = polygon.lwd): partial argument match
of 'crit' to 'critical.values'
panel.acf: possible error in get("cell", frame = this.frame): unused
argument(s) (frame = this.frame)
panel.ae.dotplot: possible error in get("cell", frame = sys.parent()):
unused argument(s) (frame = sys.parent())
panel.ae.dotplot: warning in panel.ae.leftplot(x, y, groups = groups,
col = col.AB, pch = pch.AB, ...): partial argument match of 'col' to
'col.AB'
panel.ancova: possible error in get("n", frame = sys.parent()): unused
argument(s) (frame = sys.parent())
panel.cartesian: possible error in get("cell", frame =
sys.parent(which.parent)): unused argument(s) (frame =
sys.parent(which.parent))
panel.cartesian: possible error in get("num.cell", frame =
sys.parent(which.parent)): unused argument(s) (frame =
sys.parent(which.parent))
panel.cartesian: possible error in get("which.cell", frame =
sys.parent(which.parent)): unused argument(s) (frame =
sys.parent(which.parent))
panel.cartesian: possible error in get("panel.labels", frame =
sys.parent(which.parent)): unused argument(s) (frame =
sys.parent(which.parent))
panel.cartesian: possible error in get("x", frame =
sys.parent(which.parent)): unused argument(s) (frame =
sys.parent(which.parent))
panel.cartesian: possible error in get("y", frame =
sys.parent(which.parent)): unused argument(s) (frame =
sys.parent(which.parent))
panel.cartesian: possible error in get("glist", frame =
sys.parent(which.parent)): unused argument(s) (frame =
sys.parent(which.parent))
panel.cartesian: possible error in get("scale.x", frame =
sys.parent(which.parent)): unused argument(s) (frame =
sys.parent(which.parent))
panel.cartesian: possible error in get("scale.y", frame =
sys.parent(which.parent)): unused argument(s) (frame =
sys.parent(which.parent))
panel.case: possible error in get("cell", frame = sys.parent()): unused
argument(s) (frame = sys.parent())
panel.case: possible error in get("panel.labels", frame =
sys.parent()): unused argument(s) (frame = sys.parent())
panel.case: possible error in get("cex.x", frame = sys.parent()):
unused argument(s) (frame = sys.parent())
panel.case: possible error in get("cex.y", frame = sys.parent()):
unused argument(s) (frame = sys.parent())
panel.case: warning in panel.axis(side = "bottom", at = i, labels =
names.x[i], text.cex = 1.2 * cex.x, tick = TRUE, tck = -0.06, outside
= TRUE, rot = 0): partial argument match of 'tick' to 'ticks'
panel.hov: possible error in get("cell", frame = sys.parent()): unused
argument(s) (frame = sys.parent())
panel.interaction2wt: possible error in get("cell", frame =
sys.parent()): unused argument(s) (frame = sys.parent())
panel.interaction2wt: warning in sufficient(data.frame(y, x, tt =
trace.values[subscripts]), y = "y", c("x", "tt")): partial argument
match of 'y' to 'yname'
plot.hov: possible error in eval(dft$expr[[1]], local = data): unused
argument(s) (local = data)
plot.hov: possible error in eval(dft$expr[[2]], local = data): unused
argument(s) (local = data)
plot.hov: warning in plot.hov.bf(y, group, y.name, group.name,
transpose = transpose.in): partial argument match of 'transpose' to
'transpose.in'
plot.mmc.multicomp: warning in axis(1, at = yb.min - yb, tck = 0.02,
label = FALSE): partial argument match of 'label' to 'labels'
plot.mmc.multicomp: warning in axis(1, at = yb - yb.min, tck = 0.02,
label = FALSE): partial argument match of 'label' to 'labels'
plot.mmc.multicomp: warning in axis(2, at = ybar[i], adj = 1, label =
format(round(ybar[i], decdigits.ybar), nsmall = decdigits.ybar), las
= 1): partial argument match of 'label' to 'labels'
plot.mmc.multicomp: warning in axis(2, at = ybar[i], label = FALSE, tck
= 0.02): partial argument match of 'label' to 'labels'
plot.mmc.multicomp: warning in axis(4, at = yy/2, tck = -0.01, label =
FALSE): partial argument match of 'label' to 'labels'
plot.mmc.multicomp: warning in axis(4, at = yy/2, tck = 0.01, label =
FALSE): partial argument match of 'label' to 'labels'
plot.odds.ratio: possible error in legend(x = legend.x, y = 0.4, marks
= 13, legend = c("MLE ")): unused argument(s) (marks = 13)
strip.xysplom: possible error in get("index.list", frame =
sys.parent()): unused argument(s) (frame = sys.parent())
strip.xysplom: possible error in get("cell", frame = sys.parent()):
unused argument(s) (frame = sys.parent())
strip.xysplom: possible error in get("x", frame = sys.parent()): unused
argument(s) (frame = sys.parent())
strip.xysplom: possible error in get("y", frame = sys.parent()): unused
argument(s) (frame = sys.parent())
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'anova.mean':
‘anova.mean’
S3 methods shown with full name in documentation object 'aov.sufficient':
‘vcov.sufficient’
S3 methods shown with full name in documentation object 'as.multicomp':
‘print.glht.mmc.multicomp’
S3 methods shown with full name in documentation object 'extra':
‘as.character.arima.model’ ‘coef.arima.HH’
S3 methods shown with full name in documentation object 'lm.case':
‘plot.case’
S3 methods shown with full name in documentation object 'mmc':
‘glht.mmc’
S3 methods shown with full name in documentation object 'odds.ratio':
‘plot.odds.ratio’
S3 methods shown with full name in documentation object 'persp.plane':
‘persp.plane’ ‘persp.floor’ ‘persp.back.wall.x’ ‘persp.back.wall.y’
‘persp.setup’
S3 methods shown with full name in documentation object 'plot.hov':
‘plot.hov’ ‘plot.hov.bf’
S3 methods shown with full name in documentation object 'plot.multicomp':
‘plot.matchMMC’
S3 methods shown with full name in documentation object 'seqplot.forecast':
‘seqplot.forecast’
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [64s/64s] OK
- checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/home/hornik/tmp/R.check/r-devel/Work/PKGS/HH.Rcheck/00check.log’
for details.