• using R version 2.10.0 Under development (unstable) (2009-07-01 r48886)
• using session charset: UTF-8
• checking for file 'Biodem/DESCRIPTION' ... OK
• this is package 'Biodem' version '0.1'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'Biodem' can be installed ... WARNING
  Found the following significant warnings:
  Warning: invalid whitespace before brace in file 'sur.freq.Rd' at ' \item{freq.table} { character string specifying the tipe of surname frequency table to be calculated. The available options are: "males" (table calculated using only male surnames); "females" (table calculated using only female surnames); "total" (table calculated using all the surnames); "marriages" (tables calculated using observed pairs of surnames in each population). The default option is "total". }'
  See http://www.r-project.org/nosvn/R.check/r-devel-linux-ix86/Biodem-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd files against version 2 parser ... WARNING
  Warning in parse_Rd("./man/sur.freq.Rd", encoding = "unknown") :
  bad markup (extra space?) at sur.freq.Rd:17:20
  Warning: ./man/sur.freq.Rd:17: Unnecessary braces at ‘{ character string specifying the tipe of surname frequency table to be calculated. The available options are: "males" (table calculated using only male surnames); "females" (table calculated using only female surnames); "total" (table calculated using all the surnames); "marriages" (tables calculated using observed pairs of surnames in each population). The default option is "total". }’
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking examples ... ERROR
  Running examples in 'Biodem-Ex.R' failed.
  The error most likely occurred in:
  
  > ### * Fst
  >
  > flush(stderr()); flush(stdout())
  >
  > ### Name: Fst
  > ### Title: Calculates the Fst from the conditional kinship matrix
  > ### Aliases: Fst
  > ### Keywords: array manip misc
  >
  > ### ** Examples
  >
  > # Swedlund data again...
  > data(P); data(S); data(N)
  > # starting with how many cycles to equilibrium
  > x<-mal.eq(S,P,N)
  > # calculation of phi
  > phi<-mal.phi(S,P,N,x)
  > # calcutaion of the conditional kinship matrix
  > cond<-mal.cond(phi,N)
  Error in PHI %*% k : requires numeric/complex matrix/vector arguments
  Calls: mal.cond
  Execution halted