Running examples in 'baRulho-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: noise_profile
> ### Title: Measure full spectrum sound noise profiles
> ### Aliases: noise_profile
> 
> ### ** Examples
> 
> {
+ # load example data
+ data("playback_est")
+ 
+ # custom noise reference
+ noise_profile(X = playback_est, mar = 0.01, pb = FALSE, noise.ref = "custom")
+ 
+ # remove noise selections
+ pe <- playback_est[playback_est$signal.type != "ambient", ]
+  
+  noise_profile(X = pe, mar = 0.01, pb = FALSE, noise.ref = "adjacent")
+ }
Error in aggregate.formula(formula = amp ~ sound.files + freq, data = noise.profile,  : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: noise_profile -> aggregate -> aggregate.formula
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building 'baRulho_quantifying_sound_degradation.Rmd' using rmarkdown
Loading required package: warbleR
Loading required package: tuneR
Loading required package: seewave
Loading required package: NatureSounds

NOTE: functions have been renamed (run 'print(new_function_names)' to see new names). Both old and new names are available in this version 
 Please see citation('warbleR') for use in publication
Loading required package: viridisLite
Quitting from lines 1363-1368 (baRulho_quantifying_sound_degradation.Rmd) 
Error: processing vignette 'baRulho_quantifying_sound_degradation.Rmd' failed with diagnostics:
argument 'x' is  missing -- it has been renamed from 'formula'
--- failed re-building 'baRulho_quantifying_sound_degradation.Rmd'

SUMMARY: processing the following file failed:
  'baRulho_quantifying_sound_degradation.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in ‘baRulho-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: noise_profile
> ### Title: Measure full spectrum sound noise profiles
> ### Aliases: noise_profile
> 
> ### ** Examples
> 
> {
+ # load example data
+ data("playback_est")
+ 
+ # custom noise reference
+ noise_profile(X = playback_est, mar = 0.01, pb = FALSE, noise.ref = "custom")
+ 
+ # remove noise selections
+ pe <- playback_est[playback_est$signal.type != "ambient", ]
+  
+  noise_profile(X = pe, mar = 0.01, pb = FALSE, noise.ref = "adjacent")
+ }
Error in aggregate.formula(formula = amp ~ sound.files + freq, data = noise.profile,  : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: noise_profile -> aggregate -> aggregate.formula
Execution halted
Error(s) in re-building vignettes:
  ...
--- re-building ‘baRulho_quantifying_sound_degradation.Rmd’ using rmarkdown
Loading required package: warbleR
Loading required package: tuneR
Loading required package: seewave
Loading required package: NatureSounds

NOTE: functions have been renamed (run 'print(new_function_names)' to see new names). Both old and new names are available in this version 
 Please see citation('warbleR') for use in publication
Loading required package: viridisLite
Quitting from lines 1363-1368 (baRulho_quantifying_sound_degradation.Rmd) 
Error: processing vignette ‘baRulho_quantifying_sound_degradation.Rmd’ failed with diagnostics:
argument 'x' is  missing -- it has been renamed from 'formula'
--- failed re-building ‘baRulho_quantifying_sound_degradation.Rmd’

SUMMARY: processing the following file failed:
  ‘baRulho_quantifying_sound_degradation.Rmd’

Error: Vignette re-building failed.
Execution halted
Undeclared package ‘Rraven’ in Rd xrefs
Running examples in ‘baRulho-Ex.R’ failed
The error most likely occurred in:

> ### Name: noise_profile
> ### Title: Measure full spectrum sound noise profiles
> ### Aliases: noise_profile
> 
> ### ** Examples
> 
> {
+ # load example data
+ data("playback_est")
+ 
+ # custom noise reference
+ noise_profile(X = playback_est, mar = 0.01, pb = FALSE, noise.ref = "custom")
+ 
+ # remove noise selections
+ pe <- playback_est[playback_est$signal.type != "ambient", ]
+  
+  noise_profile(X = pe, mar = 0.01, pb = FALSE, noise.ref = "adjacent")
+ }
Error in aggregate.formula(formula = amp ~ sound.files + freq, data = noise.profile,  : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: noise_profile -> aggregate -> aggregate.formula
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘baRulho_quantifying_sound_degradation.Rmd’ using rmarkdown
Loading required package: warbleR
Loading required package: tuneR
Loading required package: seewave
Loading required package: NatureSounds

NOTE: functions have been renamed (run 'print(new_function_names)' to see new names). Both old and new names are available in this version 
 Please see citation('warbleR') for use in publication
Loading required package: viridisLite
Quitting from lines 1363-1368 (baRulho_quantifying_sound_degradation.Rmd) 
Error: processing vignette 'baRulho_quantifying_sound_degradation.Rmd' failed with diagnostics:
argument 'x' is  missing -- it has been renamed from 'formula'
--- failed re-building ‘baRulho_quantifying_sound_degradation.Rmd’

SUMMARY: processing the following file failed:
  ‘baRulho_quantifying_sound_degradation.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in ‘baRulho-Ex.R’ failed
The error most likely occurred in:

> ### Name: noise_profile
> ### Title: Measure full spectrum sound noise profiles
> ### Aliases: noise_profile
> 
> ### ** Examples
> 
> {
+ # load example data
+ data("playback_est")
+ 
+ # custom noise reference
+ noise_profile(X = playback_est, mar = 0.01, pb = FALSE, noise.ref = "custom")
+ 
+ # remove noise selections
+ pe <- playback_est[playback_est$signal.type != "ambient", ]
+  
+  noise_profile(X = pe, mar = 0.01, pb = FALSE, noise.ref = "adjacent")
+ }
Error in aggregate.formula(formula = amp ~ sound.files + freq, data = noise.profile,  : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: noise_profile -> aggregate -> aggregate.formula
Execution halted
Error(s) in re-building vignettes:
--- re-building ‘baRulho_quantifying_sound_degradation.Rmd’ using rmarkdown
Loading required package: warbleR
Loading required package: tuneR
Loading required package: seewave
Loading required package: NatureSounds

NOTE: functions have been renamed (run 'print(new_function_names)' to see new names). Both old and new names are available in this version 
 Please see citation('warbleR') for use in publication
Loading required package: viridisLite
Quitting from lines 1363-1368 (baRulho_quantifying_sound_degradation.Rmd) 
Error: processing vignette 'baRulho_quantifying_sound_degradation.Rmd' failed with diagnostics:
argument 'x' is  missing -- it has been renamed from 'formula'
--- failed re-building ‘baRulho_quantifying_sound_degradation.Rmd’

SUMMARY: processing the following file failed:
  ‘baRulho_quantifying_sound_degradation.Rmd’

Error: Vignette re-building failed.
Execution halted
Running examples in 'baRulho-Ex.R' failed
The error most likely occurred in:

> ### Name: noise_profile
> ### Title: Measure full spectrum sound noise profiles
> ### Aliases: noise_profile
> 
> ### ** Examples
> 
> {
+ # load example data
+ data("playback_est")
+ 
+ # custom noise reference
+ noise_profile(X = playback_est, mar = 0.01, pb = FALSE, noise.ref = "custom")
+ 
+ # remove noise selections
+ pe <- playback_est[playback_est$signal.type != "ambient", ]
+  
+  noise_profile(X = pe, mar = 0.01, pb = FALSE, noise.ref = "adjacent")
+ }
Error in aggregate.formula(formula = amp ~ sound.files + freq, data = noise.profile,  : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: noise_profile -> aggregate -> aggregate.formula
Execution halted
Error(s) in re-building vignettes:
--- re-building 'baRulho_quantifying_sound_degradation.Rmd' using rmarkdown
Loading required package: warbleR
Loading required package: tuneR
Loading required package: seewave
Loading required package: NatureSounds

NOTE: functions have been renamed (run 'print(new_function_names)' to see new names). Both old and new names are available in this version 
 Please see citation('warbleR') for use in publication
Loading required package: viridisLite
Quitting from lines 1363-1368 (baRulho_quantifying_sound_degradation.Rmd) 
Error: processing vignette 'baRulho_quantifying_sound_degradation.Rmd' failed with diagnostics:
argument 'x' is  missing -- it has been renamed from 'formula'
--- failed re-building 'baRulho_quantifying_sound_degradation.Rmd'

SUMMARY: processing the following file failed:
  'baRulho_quantifying_sound_degradation.Rmd'

Error: Vignette re-building failed.
Execution halted
Running examples in 'baRulho-Ex.R' failed
The error most likely occurred in:

> ### Name: noise_profile
> ### Title: Measure full spectrum sound noise profiles
> ### Aliases: noise_profile
> 
> ### ** Examples
> 
> {
+ # load example data
+ data("playback_est")
+ 
+ # custom noise reference
+ noise_profile(X = playback_est, mar = 0.01, pb = FALSE, noise.ref = "custom")
+ 
+ # remove noise selections
+ pe <- playback_est[playback_est$signal.type != "ambient", ]
+  
+  noise_profile(X = pe, mar = 0.01, pb = FALSE, noise.ref = "adjacent")
+ }
Error in aggregate.formula(formula = amp ~ sound.files + freq, data = noise.profile,  : 
  argument 'x' is  missing -- it has been renamed from 'formula'
Calls: noise_profile -> aggregate -> aggregate.formula
Execution halted
Error(s) in re-building vignettes:
--- re-building 'baRulho_quantifying_sound_degradation.Rmd' using rmarkdown
Loading required package: warbleR
Loading required package: tuneR
Loading required package: seewave
Loading required package: NatureSounds

NOTE: functions have been renamed (run 'print(new_function_names)' to see new names). Both old and new names are available in this version 
 Please see citation('warbleR') for use in publication
Loading required package: viridisLite
Quitting from lines 1363-1368 (baRulho_quantifying_sound_degradation.Rmd) 
Error: processing vignette 'baRulho_quantifying_sound_degradation.Rmd' failed with diagnostics:
argument 'x' is  missing -- it has been renamed from 'formula'
--- failed re-building 'baRulho_quantifying_sound_degradation.Rmd'

SUMMARY: processing the following file failed:
  'baRulho_quantifying_sound_degradation.Rmd'

Error: Vignette re-building failed.
Execution halted