Package suggested but not available for checking: 'rPeaks'
Package suggested but not available for checking: ‘rPeaks’
Package suggested but not available for checking: ‘rPeaks’
Namespaces in Imports field not imported from:
  ‘raster’ ‘reshape2’
  All declared Imports should be used.
Package suggested but not available for checking: ‘rPeaks’
Namespaces in Imports field not imported from:
  ‘raster’ ‘reshape2’
  All declared Imports should be used.
Package suggested but not available for checking: 'rPeaks'
Package suggested but not available for checking: 'rPeaks'
Namespaces in Imports field not imported from:
  'raster' 'reshape2'
  All declared Imports should be used.
Package suggested but not available for checking: ‘rPeaks’
Package suggested but not available for checking: ‘rPeaks’
Namespaces in Imports field not imported from:
  ‘raster’ ‘reshape2’
  All declared Imports should be used.
Package suggested but not available for checking: ‘rPeaks’
Package suggested but not available for checking: ‘rPeaks’
Namespaces in Imports field not imported from:
  ‘raster’ ‘reshape2’
  All declared Imports should be used.
Package suggested but not available for checking: ‘rPeaks’
Namespaces in Imports field not imported from:
  ‘raster’ ‘reshape2’
  All declared Imports should be used.
Package suggested but not available for checking: 'rPeaks'
Package suggested but not available for checking: ‘rPeaks’
Namespaces in Imports field not imported from:
  ‘raster’ ‘reshape2’
  All declared Imports should be used.
Package suggested but not available for checking: 'rPeaks'

Packages suggested but not available for checking:
  'tmap', 'tmaptools', 'pct'
Error(s) in re-building vignettes:
--- re-building ‘demo_dutch_cities.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘demo_dutch_cities.Rmd’

--- re-building ‘hackathon.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
--- finished re-building ‘hackathon.Rmd’

--- re-building ‘paper.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
  Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 138-160 (paper.Rmd) 
Error: processing vignette 'paper.Rmd' failed with diagnostics:
there is no package called 'tmap'
--- failed re-building ‘paper.Rmd’

SUMMARY: processing the following file failed:
  ‘paper.Rmd’

Error: Vignette re-building failed.
Execution halted