Running examples in 'topologyGSA-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clique.mean.test
> ### Title: Comparison of all the cliques of a pathway.
> ### Aliases: clique.mean.test
> 
> ### ** Examples
> 
> data(examples)
> 
> clique.mean.test(y1, y2, dag_bcell, 0.05)
Error in matrix(rep(y1.mean, y1.num * gene.num), y1.num, gene.num, byrow = T) : 
  data length differs from size of matrix: [45325 != 37 x 35]
Calls: clique.mean.test -> .runCliqueVarTest -> .estimateCov -> matrix
Execution halted
Running examples in ‘topologyGSA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clique.mean.test
> ### Title: Comparison of all the cliques of a pathway.
> ### Aliases: clique.mean.test
> 
> ### ** Examples
> 
> data(examples)
> 
> clique.mean.test(y1, y2, dag_bcell, 0.05)
Error in matrix(rep(y1.mean, y1.num * gene.num), y1.num, gene.num, byrow = T) : 
  data length differs from size of matrix: [45325 != 37 x 35]
Calls: clique.mean.test -> .runCliqueVarTest -> .estimateCov -> matrix
Execution halted
Running examples in ‘topologyGSA-Ex.R’ failed
The error most likely occurred in:

> ### Name: clique.mean.test
> ### Title: Comparison of all the cliques of a pathway.
> ### Aliases: clique.mean.test
> 
> ### ** Examples
> 
> data(examples)
> 
> clique.mean.test(y1, y2, dag_bcell, 0.05)
Error in matrix(rep(y1.mean, y1.num * gene.num), y1.num, gene.num, byrow = T) : 
  data length differs from size of matrix: [45325 != 37 x 35]
Calls: clique.mean.test -> .runCliqueVarTest -> .estimateCov -> matrix
Execution halted
Running examples in ‘topologyGSA-Ex.R’ failed
The error most likely occurred in:

> ### Name: clique.mean.test
> ### Title: Comparison of all the cliques of a pathway.
> ### Aliases: clique.mean.test
> 
> ### ** Examples
> 
> data(examples)
> 
> clique.mean.test(y1, y2, dag_bcell, 0.05)
Error in matrix(rep(y1.mean, y1.num * gene.num), y1.num, gene.num, byrow = T) : 
  data length differs from size of matrix: [45325 != 37 x 35]
Calls: clique.mean.test -> .runCliqueVarTest -> .estimateCov -> matrix
Execution halted
Packages required but not available: 'gRbase', 'qpgraph'

Package suggested but not available for checking: 'Rgraphviz'

See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Package required but not available: ‘qpgraph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Installation failed.
See ‘/Volumes/SSD-Data/Builds/R-dev-web/QA/Simon/packages/el-capitan-x86_64/results/3.6/topologyGSA.Rcheck/00install.out’ for details.