Package suggested but not available for checking: ‘captioner’
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘captioner’
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘captioner’
Specified C++11: please drop specification unless essential
installed size is  8.4Mb
  sub-directories of 1Mb or more:
    data   4.0Mb
    doc    1.7Mb
    libs   2.2Mb
Package suggested but not available for checking: ‘captioner’
Specified C++11: please drop specification unless essential
Error(s) in re-building vignettes:
--- re-building ‘Comparing_methods_for_logistic_models.Rmd’ using rmarkdown
--- finished re-building ‘Comparing_methods_for_logistic_models.Rmd’

--- re-building ‘Diagnostics.Rmd’ using rmarkdown
--- finished re-building ‘Diagnostics.Rmd’

--- re-building ‘ddhazard.Rnw’ using knitr
fatal: not a git repository (or any parent up to mount point /data)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).

Quitting from lines 418-1212 (ddhazard.Rnw)
Error: processing vignette 'ddhazard.Rnw' failed with diagnostics:
there is no package called 'captioner'
--- failed re-building ‘ddhazard.Rnw’

--- re-building ‘Bootstrap_illustration.pdf.asis’ using asis
--- finished re-building ‘Bootstrap_illustration.pdf.asis’

--- re-building ‘Particle_filtering.pdf.asis’ using asis
--- finished re-building ‘Particle_filtering.pdf.asis’

SUMMARY: processing the following file failed:
  ‘ddhazard.Rnw’

Error: Vignette re-building failed.
Execution halted
Specified C++11: please drop specification unless essential
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    data   4.2Mb
    doc    1.7Mb
    libs   2.8Mb
Package suggested but not available for checking: ‘captioner’
Specified C++11: please drop specification unless essential
Package suggested but not available for checking: ‘captioner’
Specified C++11: please drop specification unless essential
Specified C++11: please drop specification unless essential
installed size is 33.1Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
    doc    1.7Mb
    libs  25.9Mb
Package suggested but not available for checking: ‘gsl’
Specified C++11: please drop specification unless essential
installed size is 32.0Mb
  sub-directories of 1Mb or more:
    data   5.2Mb
    doc    1.7Mb
    libs  24.6Mb
Specified C++11: please drop specification unless essential
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    data   4.2Mb
    doc    1.7Mb
    libs   2.8Mb
installed size is 33.1Mb
  sub-directories of 1Mb or more:
    data   5.1Mb
    doc    1.7Mb
    libs  25.9Mb
installed size is 30.5Mb
  sub-directories of 1Mb or more:
    data   4.2Mb
    doc    1.7Mb
    libs  24.1Mb
installed size is  9.1Mb
  sub-directories of 1Mb or more:
    data   4.2Mb
    doc    1.7Mb
    libs   2.8Mb