Running 'testthat.R' [74s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(joineR)
  Loading required package: survival
  > 
  > test_check("joineR")
  80% experienced event
  40% experienced event
  70% experienced event
  100% experienced event
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
  
  == Failed tests ================================================================
  -- Error ('test-comprisk.R:17'): competing risks models ------------------------
  Error in `model.frame.default(data = FALSE, formula = ~treat, xlev = list(
      treat = c("CBZ", "LTG")))`: 'data' must be a data.frame, environment, or list
  Backtrace:
      x
   1. \-joineR::joint(...) at test-comprisk.R:17:2
   2.   \-joineR:::survstCR(survdat, surv.formula, survdat2, event = 1)
   3.     \-survival::basehaz(surv.start, FALSE)
   4.       +-survival::survfit(fit, newdata = newdata, se.fit = FALSE)
   5.       \-survival:::survfit.coxph(fit, newdata = newdata, se.fit = FALSE)
   6.         +-base::eval(tcall)
   7.         | \-base::eval(tcall)
   8.         +-stats::model.frame(data = FALSE, formula = ~treat, xlev = `<named list>`)
   9.         \-stats::model.frame.default(data = FALSE, formula = ~treat, xlev = `<named list>`)
  -- Error ('test-comprisk.R:54'): bootstrap SEs with competing risks ------------
  Error in `model.frame.default(data = FALSE, formula = ~treat, xlev = list(
      treat = c("CBZ", "LTG")))`: 'data' must be a data.frame, environment, or list
  Backtrace:
      x
   1. \-joineR::joint(...) at test-comprisk.R:54:2
   2.   \-joineR:::survstCR(survdat, surv.formula, survdat2, event = 1)
   3.     \-survival::basehaz(surv.start, FALSE)
   4.       +-survival::survfit(fit, newdata = newdata, se.fit = FALSE)
   5.       \-survival:::survfit.coxph(fit, newdata = newdata, se.fit = FALSE)
   6.         +-base::eval(tcall)
   7.         | \-base::eval(tcall)
   8.         +-stats::model.frame(data = FALSE, formula = ~treat, xlev = `<named list>`)
   9.         \-stats::model.frame.default(data = FALSE, formula = ~treat, xlev = `<named list>`)
  -- Error ('test-comprisk.R:77'): ordering of subjects with competing risks -----
  Error in `model.frame.default(data = FALSE, formula = ~treat, xlev = list(
      treat = c("CBZ", "LTG")))`: 'data' must be a data.frame, environment, or list
  Backtrace:
      x
   1. \-joineR::joint(...) at test-comprisk.R:77:2
   2.   \-joineR:::survstCR(survdat, surv.formula, survdat2, event = 1)
   3.     \-survival::basehaz(surv.start, FALSE)
   4.       +-survival::survfit(fit, newdata = newdata, se.fit = FALSE)
   5.       \-survival:::survfit.coxph(fit, newdata = newdata, se.fit = FALSE)
   6.         +-base::eval(tcall)
   7.         | \-base::eval(tcall)
   8.         +-stats::model.frame(data = FALSE, formula = ~treat, xlev = `<named list>`)
   9.         \-stats::model.frame.default(data = FALSE, formula = ~treat, xlev = `<named list>`)
  -- Error ('test-comprisk.R:116'): competing risks model with covariates --------
  Error in `model.frame.default(data = FALSE, formula = ~gender + age, xlev = list(
      gender = c("F", "M")))`: 'data' must be a data.frame, environment, or list
  Backtrace:
      x
   1. \-joineR::joint(...) at test-comprisk.R:116:2
   2.   \-joineR:::survstCR(survdat, surv.formula, survdat2, event = 1)
   3.     \-survival::basehaz(surv.start, FALSE)
   4.       +-survival::survfit(fit, newdata = newdata, se.fit = FALSE)
   5.       \-survival:::survfit.coxph(fit, newdata = newdata, se.fit = FALSE)
   6.         +-base::eval(tcall)
   7.         | \-base::eval(tcall)
   8.         +-stats::model.frame(data = FALSE, formula = ~gender + age, xlev = `<named list>`)
   9.         \-stats::model.frame.default(...)
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 85 ]
  Error: Test failures
  Execution halted